Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00596 ATGGCGCATAGAGTGGACCACGAGTATGACTATCTCTTCAAGATCGTTTTGATCGGAGACTCTGGTGTTGGCAAATCCAACATCCTCTCCAGGTTCACTCGGAACGAGTTCTGTTTGGAGTCCAAATCCACTATCGGAGTTGAGTTCGCCACCAGGACTCTTCAGGTAGAGGGAAAAACCGTGAAAGCACAGATCTGGGACACAGCGGGTCAGGAGCGATACCGTGCCATTACAAGTGCTTATTATAGAGGTGCTGTTGGTGCTTTACTTGTATATGACATAACAAAGAGGCAAACCTTTGATAATGTCCAAAGGTGGCTGCGTGAACTGAGGGACCATGCAGATTCTAATATAGTTATCATGATGGCTGGAAATAAATCTGATTTGAGCCATCTTAGAGCGGTTTCGGGGGATGATGGTCAAACATTGGCAGAGAGGGAAGGTCTCTCGTTTCTCGAGACATCTGCTCTGGAAGCAACCAACATTGAGAAGGCATTCCAAACCATTTTGACAGAGATTTATCATATTGTTAGCAAAAAGGCACTAGCAGCTCAGGAAGCAGCTGCTAGTACCTCAGTTCCTGGTCAAGGTACCACCATCAATGTTGGGGATGCATCTGCGAATACAAAGAGAGGCTGCTGCTCCACTTAA 651 0.4639 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLSHLRAVSGDDGQTLAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEAAASTSVPGQGTTINVGDASANTKRGCCST 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00596 216 PANTHER - 1 216 - -
Cca04g00596 216 SMART ras_sub_4 10 176 - -
Cca04g00596 216 TIGRFAM small_GTP: small GTP-binding protein domain 11 170 IPR005225 GO:0005525
Cca04g00596 216 SMART rab_sub_5 13 176 - -
Cca04g00596 216 PANTHER RAS-RELATED PROTEIN RABA2D 1 216 - -
Cca04g00596 216 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Cca04g00596 216 SMART arf_sub_2 1 178 - -
Cca04g00596 216 CDD Rab11_like 10 174 - -
Cca04g00596 216 ProSiteProfiles small GTPase Rho family profile. 6 188 - -
Cca04g00596 216 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Cca04g00596 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Cca04g00596 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Cca04g00596 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Cca04g00596 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Cca04g00596 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Cca04g00596 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Cca04g00596 216 Gene3D - 5 214 IPR027417 -
Cca04g00596 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Cca04g00596 216 SMART ran_sub_2 18 216 - -
Cca04g00596 216 ProSiteProfiles small GTPase Ras family profile. 1 216 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00596 Cca-Chr4 5947266 5949724 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00596 K07904 - gmx:100799021 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00596 04 5947266 5949724 Cca04g00596 04 5947266 5949724 ECH