Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00595 ATGCGGCAATGGAAGCAATTGGGAGAGGTGTTGGTGGCGGCTTCCATCACCAACACGCTAtctcactctcactctgcaactctcaacctccctcgcaccctcGCCGTTGGACTCAACCAAACCCTAATTCTCAAAATCCTTTCCAACCCTACGCTCCACCCTTCGCACAAGCTCCGTTTCTTCGAGTGGTCTCGCTCCCACCACAATCCTTCCCCCGCCGCGTACTCCCTCATCCTCCGCGCCCTCTCCCGCGCCGGCAACTTCTCCGACATCCCCTCCCTCCTCCATTCCATGACGCAAGACGGCGTCGTTTTGGACCCGCACACCCTCAATCTCCTCCTCCACTCCTTCATCCTCTCCTCTAACTTCAATTTAGCACTCCAATTACTAGACTACGTGCAACACCTTCACCTCGACCCTACCCCTGTCTACAACTCGCTTCTCGCTGCTCTTCTCGCGAAAAACCAACTTTCCCTCGCCCTCTCCATCTTCTTCAAGCTCCCACACGCCGTTGATTCGAAATCCATCGCCTGCAATCAATTATTGGTTGCTCTTAGGAAAGCGGACATGCGGGTGGAGTTCAAGCAAGTGTTCCAAAGGTTGAGGGAGAAGAGAGGGTTTTCCTTTGACACGTGGGGTTACAATGTGTGTATCCATGCTTTTGGTTGTTGGGGCGATTTGGTTACTTGCTTTGAGCTTTTCAAGGAGATGAAGGATGCTAAGGGGTTGGTTGCCCCTGACTTGTGCACCTACAACAGTCTCATTGCAGCGCTTTGCAGGCTTGGCAAGGTGGATGATGCGCTCGTCGTGTGGGAGGAGCTGAATGGCTCGCCTCATCAACCCGATCGCTTCACTTACACGAACCTTATTCAGGCGTGCTCCAAGACTTACAGATTAGATGATGCCACCAGGGTTTTTAACCATATGCAGAGCAATGGGTTCAGGCCGGAAACGGTTGTTTATAACTCTCTGCTGGATGGACATTTTAAGGCCACTAAGGTTACAGAAGCCTGTCAGCTGTTTGAGAAAATGGTTCAAGAAGGGGTGAAGCCGTCATCCTGGACTTATAATATTCTCATTCATGGATTGCTTAGGAATGGCAGGGCGGAAGCGGCGTATACTATGTTTTGTGACCTCAAGAAGAAGGGCCAATTTGTGGATGGGATTACTTACAGCATTGTTGTGTTGCAACTTTGTAGGGAGGGTCAATTAGAGGAGGCGCTGCAGTTGGTGGAAGAAATGGAAAGCAGAGGTTTTGTTGTTGACCTTGTTACTATAACATCCCTCTTGATTAGCATTCATAGACACGGTCGCTGGGATTGGACGGACCGCCTTATGAAGCATATCAGGGAAGGTAATTTGGTACTCTCTGTTCTCAAATGGAAAGCTGGAATGGAAGCTTCTATGAAGAACCCACCTAGCAAGAAAAAGGATTACTCACCCTTGTTCCCTGCCAAAGGAGATTTTAGTGACATCATGAGCTTCATGAGTGGTCCCCAGGATACCGCCAACATTAATGATGGGGAGGAAACTTCCAGCAATGAAATTGACGAGTGGTCATCATCGCCATACATGGATAAATTGGCCAATCAAGTGAGCTCCGCTGGCCATTCTTCCCAGCTGTTTACTCCTTCTCGTGGACAAAGAGTTCAAGAAAAAGGGTCGGATTCTTTTGATGTTGATATGATGAATACTTTCTTGTCTATATTTTTGGCCAAGGGAAAGTTGAGCTTGGCTTGCAAACTGTTTGAGATTTTCAGTGATGCAGGTGTGGATCCTGTGAGTTATACTTATAATTCTATCATGAGCTCATTTGTCAAAAAGGGCTATTTCACTGAGGCTTGGGCTATTCTAACTGAAATGGGAGAGAAGTTTTGCCCAGCTGATATAGCCACATACAATATGATCATTCAAGGTTTAGGAAAGATGGGAAGAGCAGATCTAGCCAGTGCTGTTCTTGATAGGCTACTGAAGCAGGGTGGTTATCTTGACATAGTTATGTATAACACTCTCATCAATGCTTTGGGGAAGGCAGGCCGAATTGATGAGGTGAACAAGCTCTTTGAGCAAATGAGGAGCAGTGGGATAAATCCTGATGTTGTCACTTATAATACATTAATTGAAGTTCACAGTAAGGCAGGGCGATTGAAGGAGGCTTATAAGTTCTTGAAAATGATGCTGGATGCGGGATGCACTCCTAACCATGTTACAGACACAACTTTAGATTATCTAGGGAGGGAGATTGATAAATTGAGATTCCAAAAGGCATCAATTTTGAGCGAAAAAGATGATCCATCTTGA 2301 0.4594 MRQWKQLGEVLVAASITNTLSHSHSATLNLPRTLAVGLNQTLILKILSNPTLHPSHKLRFFEWSRSHHNPSPAAYSLILRALSRAGNFSDIPSLLHSMTQDGVVLDPHTLNLLLHSFILSSNFNLALQLLDYVQHLHLDPTPVYNSLLAALLAKNQLSLALSIFFKLPHAVDSKSIACNQLLVALRKADMRVEFKQVFQRLREKRGFSFDTWGYNVCIHAFGCWGDLVTCFELFKEMKDAKGLVAPDLCTYNSLIAALCRLGKVDDALVVWEELNGSPHQPDRFTYTNLIQACSKTYRLDDATRVFNHMQSNGFRPETVVYNSLLDGHFKATKVTEACQLFEKMVQEGVKPSSWTYNILIHGLLRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCREGQLEEALQLVEEMESRGFVVDLVTITSLLISIHRHGRWDWTDRLMKHIREGNLVLSVLKWKAGMEASMKNPPSKKKDYSPLFPAKGDFSDIMSFMSGPQDTANINDGEETSSNEIDEWSSSPYMDKLANQVSSAGHSSQLFTPSRGQRVQEKGSDSFDVDMMNTFLSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFTEAWAILTEMGEKFCPADIATYNMIIQGLGKMGRADLASAVLDRLLKQGGYLDIVMYNTLINALGKAGRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGRLKEAYKFLKMMLDAGCTPNHVTDTTLDYLGREIDKLRFQKASILSEKDDPS 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00595 766 Pfam PPR repeat family 246 294 IPR002885 -
Cca04g00595 766 Pfam PPR repeat family 698 741 IPR002885 -
Cca04g00595 766 Pfam PPR repeat family 595 641 IPR002885 -
Cca04g00595 766 Pfam PPR repeat family 316 364 IPR002885 -
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Cca04g00595 766 Pfam Pentatricopeptide repeat domain 93 150 IPR002885 -
Cca04g00595 766 Gene3D Tetratricopeptide repeat domain 312 381 IPR011990 GO:0005515
Cca04g00595 766 Gene3D Tetratricopeptide repeat domain 624 692 IPR011990 GO:0005515
Cca04g00595 766 Gene3D Tetratricopeptide repeat domain 693 746 IPR011990 GO:0005515
Cca04g00595 766 Gene3D Tetratricopeptide repeat domain 382 454 IPR011990 GO:0005515
Cca04g00595 766 Gene3D Tetratricopeptide repeat domain 524 623 IPR011990 GO:0005515
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Cca04g00595 766 PANTHER DEFECTIVE KERNEL35 3 761 - -
Cca04g00595 766 Gene3D Tetratricopeptide repeat domain 41 160 IPR011990 GO:0005515
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 698 IPR002885 -
Cca04g00595 766 SUPERFAMILY TPR-like 251 728 IPR011990 GO:0005515
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 284 316 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 666 700 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 249 274 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 632 664 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 74 106 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 596 629 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 214 243 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 701 734 IPR002885 -
Cca04g00595 766 TIGRFAM PPR: pentatricopeptide repeat domain 355 383 IPR002885 -
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Cca04g00595 766 Pfam PPR repeat 214 239 IPR002885 -
Cca04g00595 766 Pfam PPR repeat 666 696 IPR002885 -
Cca04g00595 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 761 - -
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 699 733 IPR002885 -
Cca04g00595 766 Gene3D Tetratricopeptide repeat domain 169 311 IPR011990 GO:0005515
Cca04g00595 766 Pfam PPR repeat 383 415 IPR002885 -
Cca04g00595 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00595 559 749 Glycosyltransferase AT1G05670 32.812 1.43e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00595 - - gmx:100788992 1381.7