Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00593 ATGGCGTTTCGTTCCTTCTCAAATAAATTTAAAATCCGTGATTTGGGTTCAGTAATAGTGGGAGAGTTTACGAGAAGTCGCAAACCCATCAAAGACGCTTCAACTTCAATGCCCTTGGTTGCAGTGTCCGAAAGCAATTGGTTCAAAACGGCGTCGTGGTTGAGGCACTACCACGACGGAAGACCCAGAGGGCCCCTTTGGAGAGGAAAGAAGCTCATTGGCAAAGAAGCGCTCTTTGTGATAATTGGGTTGAAGAGGTTTAAGGACGACGAGGATAAGCTTCACAAGTTCATCAAAACCCACGTTCTCAGACTCTTGAAGATGGACATGATTTCTGTTCTCACTGAACTTGAGCGCCAGGAACAAGTTTCTCTCGCTCTCATGATGTTTAAGGTGATGCAAAAGCAAGATTGGTACAAGCCTGATGCATACCTCTATAAGGACTTGATCATTTCATTGGCAAGGTCTAAAAAAATGGATGAAGTATTGCAAATTTGGGAAAGCATGAGAAAGGAAAATCTGTTCCCTGATTCTCAGACTTATACTGAAGTCATAAGGGGCTTCTTGAACTATGGATCTCCCGCGGATGCGATGAACATATATGAGGACATGAAGAATTCTCCGGATCCACCAGAGGAGTTGCCGTTCAGAATTTTGTTGAAAGGGCTCCTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAGGATTTCGAGGAGATTTTTCCTGATTCAAGTATCTATGATCCGCCGCAAGAGATATTTGGTGCACGCTGA 774 0.438 MAFRSFSNKFKIRDLGSVIVGEFTRSRKPIKDASTSMPLVAVSESNWFKTASWLRHYHDGRPRGPLWRGKKLIGKEALFVIIGLKRFKDDEDKLHKFIKTHVLRLLKMDMISVLTELERQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIISLARSKKMDEVLQIWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00593 257 Pfam PPR repeat family 142 188 IPR002885 -
Cca04g00593 257 TIGRFAM PPR: pentatricopeptide repeat domain 180 206 IPR002885 -
Cca04g00593 257 TIGRFAM PPR: pentatricopeptide repeat domain 146 177 IPR002885 -
Cca04g00593 257 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 5 256 - -
Cca04g00593 257 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Cca04g00593 257 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Cca04g00593 257 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 5 256 IPR044795 -
Cca04g00593 257 Gene3D Tetratricopeptide repeat domain 71 257 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00593 Cca-Chr4 5930569 5933206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00593 112 224 Miscellaneous Gene Families AT4G11690 23.894 2.31e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00593 - - gmx:100798492 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00593 04 5930569 5933206 Cca04g00593 04 5930569 5933206 ECH