Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00592 ATGAGCAGTGGAAGGAATATTGGGGTGGCCTTGGATTTCTCCAAGGGAAGCAAGAGTGCTCTCAAATGGGCTCTTGAGAATCTTCTCCGCGACGGTGACACCCTCtatatcatccacatcaaaccttctcaagccagtgaatcccgaaatcttctctggtccaccaccggttcacCTCTCATTCCCTTGTCAGAGTTTCGTGAGAAGGATGTGATGCACCATTATGAGGTCGATACTGATCCCGAGGTTTTGGACATACTTGACACCGCTTCTAGGCAGAAACAGGTTACTGTGGTGGCAAAGCTATACTGGGGTGATGCAAGAGACAAAGTTTGTGAAGCCGTTGGTGATTTGAAGCTTCACTCTTTGGTCATGGGTAGCAGAGGCCTCGGCGCAATACAGAGGGTATTGCTGGGGAGTGTGACCAGTTATGTTGTCACAAATGCGAATTGCCCTGTAACGATTGTGAAAGATATCTGA 480 0.4146 MSSGRNIGVALDFSKGSKSALKWALENLLRDGDTLYIIHIKPSQASESRNLLWSTTGSPLIPLSEFREKDVMHHYEVDTDPEVLDILDTASRQKQVTVVAKLYWGDARDKVCEAVGDLKLHSLVMGSRGLGAIQRVLLGSVTSYVVTNANCPVTIVKDI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00592 159 Gene3D HUPs 3 159 IPR014729 -
Cca04g00592 159 PRINTS Universal stress protein signature 4 22 IPR006015 -
Cca04g00592 159 PRINTS Universal stress protein signature 117 129 IPR006015 -
Cca04g00592 159 PRINTS Universal stress protein signature 135 157 IPR006015 -
Cca04g00592 159 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 157 - -
Cca04g00592 159 CDD USP_Like 6 156 - -
Cca04g00592 159 PANTHER IMP2'P 1 158 - -
Cca04g00592 159 Pfam Universal stress protein family 5 157 IPR006016 -
Cca04g00592 159 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE SUPERFAMILY PROTEIN 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00592 Cca-Chr4 5923666 5925080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00592 6 46 Receptor kinase-like Gene Family AT5G35380 51.220 1.67e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00592 - - ccaj:109790326 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00592 04 5923666 5925080 Cca04g00592 04 5923666 5925080 ECH