Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00583 ATGTCAATTGTTCCTAGGGACGGTTCCAATTCCTCTCACGAGTTTTGGGATCTGAATGGCTTGGCTATGTCTATGTGGGATCCATTCGCGGATTTCCCTTTCCCTCCTTCCATTTCTGCCTTGGGATTCGGGTCATCGATGAACACACGTGTGGATTGGAGGGAGACACCGAGAGCGCACGTGTGGCAGGTGGTGCTTCCGAGGTTCAGCAATGAGGAGGTGCTGCTGGAGCTCCAGGACGAGAGGATGCTTCAAGTGAGCGTGGAGAGCGGAAACTTCCTCACCCGGTTTAAGATTCCCGACAACGCTAACCTCGAACAACTCAAAGCCGACATCAATCACGGGGCTCTTCTTGTCACTGTTCCCAAGTTTCCCCAACAACCTCCCACTACGAATGTCAGGCTCATTCCTATTGACGCCACCGACTGA 429 0.5291 MSIVPRDGSNSSHEFWDLNGLAMSMWDPFADFPFPPSISALGFGSSMNTRVDWRETPRAHVWQVVLPRFSNEEVLLELQDERMLQVSVESGNFLTRFKIPDNANLEQLKADINHGALLVTVPKFPQQPPTTNVRLIPIDATD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00583 142 Pfam Hsp20/alpha crystallin family 77 138 IPR002068 -
Cca04g00583 142 Gene3D - 12 138 IPR008978 -
Cca04g00583 142 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 19 139 - -
Cca04g00583 142 PANTHER 17.5 KDA CLASS I HEAT SHOCK PROTEIN 19 139 - -
Cca04g00583 142 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 42 141 IPR002068 -
Cca04g00583 142 SUPERFAMILY HSP20-like chaperones 16 129 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00583 Cca-Chr4 5860691 5866730 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00583 K13993 - gmx:100305751 176.792