Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00577 ATGGTGCAATATAACTTTAAGAAGATTACTGTGGTGCCTAATGGGAAGGATTTCGTTGATATCATCCTCTCTCGCACTCAGCGTCAGACCCCAACAGTTGTGCATAAAGGATATGCAATTTCACGGCTGCGCCAGTTCTACATGCGCAAAGTGAAGTATACACAGCAAAATTTTTATGATAAGCTCTCCACCATAATTGATGATTTCCCTCGGCTTGACGATATTCATCCTTTCTATGGCGATCTCCTCCATGTGCTCTACAACAAAGACCATTACAAGCTTGCCCTTGGGCAAATCAACACTGCCAGGAATCTTATTGGAAAGATTGCAAAAGACTATGTGAAATTGCTGAAGTATGGTGACTCACTGTACCGATGCAAGTGTCTGAAGGTGGCCGCTCTTGGCCGCATGTGCACTGTGATCAAGAGGATTGGCCCAAGTTTAGCGTATCTTGAACAAGTTAGACAGCACATGGCTAGGCTTCCATCGATTGATCCAAATACAAGGACTGTCTTGATCTGTGGATATCCTAATGTTGGCAAGAGCTCGTTCATTAACAAAATTACAAGAGCTGATGTTGATGTGCAGCCCTATGCTTTCACTACAAAATCTCTCTTTGTGGGTCATACAGATTATAAGTATCTAAGGTACCAAGTAATTGATACTCCGGGGATTTTGGACAGGCCATTTGAAGACCGCAATATTATTGAGATGTGCAGTATCACTGCTCTAGCACATCTGAGAGCTGCAATATTGTTTTTCTTGGACATCTCTGGGTCTTGTGGTTACACTATTGCTCAGCAGGCAGCTCTATTTCACAGCATTAAGTCTTTGTTTCTGAACAAGCCACTGATTATAGTCTGCAACAAGACTGACTTGCAACCATTGGAGGGGATATCTGAGGAAGACAAGAAGTTGGTCAAGGAGATGCAAGCTGAAGCCTTGAAGACTCTAGTTGGTCAAGGGGGTGAGCCTACTGATGATGACAGTGTATTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCAGTAAAAAATGCAGCATGTGAAAGGTTATTGAATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAAATTAATGATTGCTTGAATAGGTTTCATGTTGCTGTTCCAAAGCCTCGTGACCAGAAGGAAAGACCAGCTTGCATTCCTCAAGCAGTTTTAGAAGCTAAAGCTAAGGAAGCGGCTGAGAAGGAAAAGAGAAAAACTGAAAAGGATCTGGAGAATGAGAATGGTGGGGCAGGTGTATATTCAATGAACTTGAGAAAGAATTACATTTTAGCCAGTGATGAATGGAAAGAAGATATATTGCCAGAAATTTTAGATGGGCACAATGTGTATGACTTCATTGATCCTGATATTCTGCATAGGGTTGAAGAGTTGGAAAGAGAAGAAGGGTTAAGACAGGCAGAAGCTGAGGATGATGATTTTGAGATTGATGGAACTGAATTGACGCCTGAACAGCAAGAAGCTTTAGCTGAGATTAGGAAGAAGAAAAGCTTGCTCATCCAGCAGCATAGGATTAAAAAGAGCAATGCTGAGAATCGACCAACTGTTCCAAGGAAGTTTGACAAGGACAAGCAATACACATCAGAAAGAATGGGAAGGCAACTGTCATCTTTGGGCCTTGATCCTACTTTGGCAATTAAGAGAATGCGCAGCAGATCTGCCTCTACAAGAGGCCGGAAAAGAGAAAGATCACCTGAAAGGAGAAGTGCTGATGGCAGAGATGGAATGGATATTGATGGTGACACACCTAGCAAAAAGCAGCGGTTGAGCAGATCACTCTCAAGGTCCAGGTCGGTGTCACGCCCACCACATGAAGTTGTGCCTGGAGAGGGCTTCAAGGATTCTGCTCAAAAGATCAAGGCAATTAAACTTGCAAAGAAATCTGTCAAGAAGAGAAACAAGGATGCCCGTCGTGGAGAATCTGATAGAGTTATACCTAACCTGAAGCCCAAGCACTTGTTTTCTGGGAAGCGCTCCTCTGGAAAAACTGATAGACGCTAG 2037 0.4305 MVQYNFKKITVVPNGKDFVDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFYDKLSTIIDDFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRIGPSLAYLEQVRQHMARLPSIDPNTRTVLICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDISGSCGYTIAQQAALFHSIKSLFLNKPLIIVCNKTDLQPLEGISEEDKKLVKEMQAEALKTLVGQGGEPTDDDSVLLTMSTLTEEGVIAVKNAACERLLNQRVEIKMKSKKINDCLNRFHVAVPKPRDQKERPACIPQAVLEAKAKEAAEKEKRKTEKDLENENGGAGVYSMNLRKNYILASDEWKEDILPEILDGHNVYDFIDPDILHRVEELEREEGLRQAEAEDDDFEIDGTELTPEQQEALAEIRKKKSLLIQQHRIKKSNAENRPTVPRKFDKDKQYTSERMGRQLSSLGLDPTLAIKRMRSRSASTRGRKRERSPERRSADGRDGMDIDGDTPSKKQRLSRSLSRSRSVSRPPHEVVPGEGFKDSAQKIKAIKLAKKSVKKRNKDARRGESDRVIPNLKPKHLFSGKRSSGKTDRR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00577 678 Pfam NOGCT (NUC087) domain 410 463 IPR012973 -
Cca04g00577 678 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 169 355 IPR031167 GO:0005525
Cca04g00577 678 MobiDBLite consensus disorder prediction 570 600 - -
Cca04g00577 678 CDD NOG 169 355 - -
Cca04g00577 678 PRINTS GTP1/OBG GTP-binding protein family signature 171 191 IPR006073 GO:0005525
Cca04g00577 678 PRINTS GTP1/OBG GTP-binding protein family signature 192 210 IPR006073 GO:0005525
Cca04g00577 678 PRINTS GTP1/OBG GTP-binding protein family signature 219 234 IPR006073 GO:0005525
Cca04g00577 678 Coils Coil 399 422 - -
Cca04g00577 678 Gene3D - 162 373 IPR027417 -
Cca04g00577 678 Gene3D - 3 161 - -
Cca04g00577 678 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 1 678 - -
Cca04g00577 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 312 IPR027417 -
Cca04g00577 678 MobiDBLite consensus disorder prediction 515 678 - -
Cca04g00577 678 Pfam Nucleolar GTP-binding protein 1 (NOG1) 236 292 IPR010674 GO:0005525
Cca04g00577 678 Pfam NOG1 N-terminal helical domain 6 165 IPR041623 -
Cca04g00577 678 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 1 678 - -
Cca04g00577 678 MobiDBLite consensus disorder prediction 518 541 - -
Cca04g00577 678 PIRSF NOG1 1 678 IPR024926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00577 Cca-Chr4 5805750 5809021 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00577 K06943 - gmx:100784033 1222.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00577 04 5805750 5809021 Cca04g00577 04 5805750 5809021 ECH