Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00576 ATGTTGAGGGTGGCGGTGCGATGGAATTGGAGGCCAATGGCTTCTCTGCCTCAAACTCCCTACACGTGCCAACTCTTTCACACGCTTAACCCTAGGCCTCGATTCTGCACCTTCAAGCTTTTTCCTCGACCTTATTCTTCTGTTGTTGCGCATGCCTCGCATCCTCTCTCCGGCGACGTGGACCGCCACCTTCGCTGCTCCATGCCGCATAACTCGCCGCTCCGTGTCGCGGTTCTCGTTAGCGGAGGCGTCGACAGTAGCGTCGCTCTCCGGCTGCTCCACGCCGCCGGTCATTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCCAAAGCTGTTTGTAATCAGATTCATGTACCGTTGGAAGTTGTTCACTTAACTGATGAATACTGGAATAGTGTGGTTTCTTATCTTATTGAAGAGTATAGTAGTGGTCGAACTCCTAACCCTGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCGATCGGTGGTATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTGTCCATCCATGTGCTGATCAGATGAATGAGCCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACTTACTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCGACTTCTTTTTCCACTTGGTTGCATTCCCAAGGATGAAGTGCGCAGGCTTGCCACACAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAGAGAAGGTATCATACTGGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGAGGGTTCTGGTTTTATACTATTGGTCAGCGCCAGGGTTTACGGCTTCCTGGAGGTCCATGGTATGTTGTCGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTTCGAGTTGGCTCTTTTAAATGGCTTAGTGGGTTGCCCCCAGGCCAGACAAGTCAGCTCCAATGCAAGGTGAGACATGGTCCTGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGAGATGGGCAATATCACTCTGCTGTTGTCCACATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCCTTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTATGTACGAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAAAGATTGGGAATCCAGTAAAAATAAAAGTTAAACCCGATAACCCACAAGAAGTGAGTGATTCTGCAGTGTTAGCAAGTAAAAAATCATAA 1470 0.4544 MLRVAVRWNWRPMASLPQTPYTCQLFHTLNPRPRFCTFKLFPRPYSSVVAHASHPLSGDVDRHLRCSMPHNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKAVCNQIHVPLEVVHLTDEYWNSVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVVHPCADQMNEPSVLELSQDMVKDQTYFLSHLSQSQLKRLLFPLGCIPKDEVRRLATQFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSGLPPGQTSQLQCKVRHGPGFYDCSLQMEVEGDGQYHSAVVHISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQEVSDSAVLASKKS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00576 489 Pfam tRNA methyl transferase HUP domain 75 278 - -
Cca04g00576 489 TIGRFAM trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 75 435 IPR004506 GO:0008033|GO:0016740
Cca04g00576 489 MobiDBLite consensus disorder prediction 465 489 - -
Cca04g00576 489 PANTHER - 61 468 - -
Cca04g00576 489 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 75 320 - -
Cca04g00576 489 CDD tRNA_Me_trans 75 435 IPR004506 GO:0008033|GO:0016740
Cca04g00576 489 Pfam Aminomethyltransferase beta-barrel domain 355 435 IPR046885 -
Cca04g00576 489 Pfam tRNA methyl transferase PRC-barrel domain 283 345 IPR046884 -
Cca04g00576 489 Gene3D Translation factors 354 444 - -
Cca04g00576 489 Gene3D - 288 347 IPR023382 GO:0016783
Cca04g00576 489 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 74 436 IPR004506 GO:0008033|GO:0016740
Cca04g00576 489 Gene3D HUPs 60 287 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00576 K21027 - gmx:100785275 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00576 04 5801736 5805551 Cca04g00576 04 5801736 5805551 ECH