Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00575 ATGGCACACACTCTAACACTAAGCCCCATCTCTTACACTCTCGCTAAAACCCTAAACCCCATTTCTCCATTCCACAACACTCTTCCCTTCTCCTCTTCATTCCTTTCTCGCCCCAACCTCACTCGCCGGACCCTATCCCGCTCCGTCCTGCGCTCCGCCGCTGCCCAATTCTCAGCCACCGTTgacgacgacgacgacgacaacttggacgaGCTCGATCTCATCGCCCTCGAGCAAGAAGCCAAGGACGCTGCCGAAGCGTATTCAACCTCTCTCTCTCAAACTTTGACCATCGAAGACGAGGAGAAAAATGATGGCAAGGAAACAGCTCAATCCCGCAGGAAGAGTGCACGTACAACAAAATTTATCCCTGACAATCTTCTCCCAAGGGTTGCAATTGTTGGAAGGCCAAATGTTGGCAAATCAGCATTATTTAATCGACTTGTTGGGGGAAACAGGGCTATCGTGGTGGATGAACCTGGGGTTACCAGGGATCGTTTATATGGTCGATCATATTGGGGAGAGCATGAATTCATGGTTGTGGACACCGGTGGGGTTCTCACTGTTTCAAAATCACAAGCTACTGTTATGGAAGAGCTGGCTATTACTACTACCATTGGTATGGATGGCATTCCACTTGCTGTTAGAGAGGCAGCTGTTGCCAGGATGCCCTCAATGATAGAGAGACAAGCAACTGCAGCTGTGGAAGAATCACCTGTTATTATTTTCCTGGTTGATGGTCAGGCTGGTCTAACAGCAGCTGATGAGGAGATTTCTGATTGGCTACGTAAAAACTACTCAGACAAATGTGTTATTCTTGCAGTTAACAAGTGTGAATCTCCACGCAAAAGAATTATGCAGGCGTCTGAATTTTGGTCCCTTGGATTTGAACCACTACCAATATCAGCTATCTCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGGCTACAGAAAATTGAGGAATCAAATAATCTTGTTGTAAAAGAAGATTATGTTCCAGCAATTTCAATTGTTGGAAGACCAAATGTTGGCAAAAGTAGCATTTTGAATGCACTGGTTGGTGAGGACAGAACAATAGTCAGCCCCATCAGTGGCACTACCCGTGATGCTATTGATACTGAATTTACTGGACCGGATGGACAGAAATTCAAGCTTATTGATACTGCTGGAATCAGAAAAAGAACAGCCATAGCTTCAGCTGGAAGTACAACAGAGGCTTTATCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATCGAGGCCATGGCTTGTATCACAGAACAGGACTACAAGATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAACAAAAACCAGCAGACTGCAGCATACTATGAGCAAGATGTCAGGGAGAAGCTTCGCTCACTTGACTGGGCTCCAATTGTTTATTCTACTGCTGTAGCTGGTCATAGTGTTGACAAGATTATAGTTGCTGCTAGTGAAGTTGTAAAGGAGAGATCAAGAAGACTAGGCACTTCTATCTTGAATCAAGTAGTTCAGGAAGCAGTAGCTTTTAAGCCTCCTCCCAGGACACGGGGTGGAAAAAGAGGGCGTGTTTACTACTGCACTCAGGCTGCTATAAGGCCACCTACATTTGTGTTTTTCGTCAATGATGCAAAACTTTTTCCTGAGACTTACCGGCGCTATATGGAGAAGCAACTGCGCACAGATGCAGGTTTTCCTGGTACACCCATTCGACTTCTGTGGCGCAGCAGAAGGAAAATAGGAAAAGATGAAGGCAAAGCTGTAACAAAAACCCAAGAGAATCTTAAATCAAATGATCGAAAATTGGTATCAACTACACCATAG 1899 0.4423 MAHTLTLSPISYTLAKTLNPISPFHNTLPFSSSFLSRPNLTRRTLSRSVLRSAAAQFSATVDDDDDDNLDELDLIALEQEAKDAAEAYSTSLSQTLTIEDEEKNDGKETAQSRRKSARTTKFIPDNLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGEHEFMVVDTGGVLTVSKSQATVMEELAITTTIGMDGIPLAVREAAVARMPSMIERQATAAVEESPVIIFLVDGQAGLTAADEEISDWLRKNYSDKCVILAVNKCESPRKRIMQASEFWSLGFEPLPISAISGTGTGELLDLVCSGLQKIEESNNLVVKEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFKLIDTAGIRKRTAIASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIEKEGKGCVIVVNKWDTIPNKNQQTAAYYEQDVREKLRSLDWAPIVYSTAVAGHSVDKIIVAASEVVKERSRRLGTSILNQVVQEAVAFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPETYRRYMEKQLRTDAGFPGTPIRLLWRSRRKIGKDEGKAVTKTQENLKSNDRKLVSTTP 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00575 632 TIGRFAM small_GTP: small GTP-binding protein domain 337 505 IPR005225 GO:0005525
Cca04g00575 632 Pfam KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 519 600 IPR032859 -
Cca04g00575 632 MobiDBLite consensus disorder prediction 98 118 - -
Cca04g00575 632 MobiDBLite consensus disorder prediction 607 632 - -
Cca04g00575 632 Gene3D - 126 329 IPR027417 -
Cca04g00575 632 MobiDBLite consensus disorder prediction 607 622 - -
Cca04g00575 632 MobiDBLite consensus disorder prediction 93 118 - -
Cca04g00575 632 ProSiteProfiles EngA-type guanine nucleotide-binding (G) domain profile. 337 517 IPR031166 GO:0005525
Cca04g00575 632 CDD EngA1 132 320 - -
Cca04g00575 632 PANTHER GTPASE DER 108 610 - -
Cca04g00575 632 Pfam 50S ribosome-binding GTPase 339 460 IPR006073 GO:0005525
Cca04g00575 632 Pfam 50S ribosome-binding GTPase 130 277 IPR006073 GO:0005525
Cca04g00575 632 Gene3D - 519 603 IPR015946 -
Cca04g00575 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 606 IPR027417 -
Cca04g00575 632 TIGRFAM GTPase_EngA: ribosome-associated GTPase EngA 222 599 IPR016484 GO:0005525
Cca04g00575 632 PANTHER GTP-BINDING PROTEIN 108 610 - -
Cca04g00575 632 Gene3D - 333 517 IPR027417 -
Cca04g00575 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 320 IPR027417 -
Cca04g00575 632 CDD EngA2 339 512 - -
Cca04g00575 632 Hamap GTPase Der [der]. 128 603 IPR016484 GO:0005525
Cca04g00575 632 PRINTS GTP1/OBG GTP-binding protein family signature 339 359 IPR006073 GO:0005525
Cca04g00575 632 PRINTS GTP1/OBG GTP-binding protein family signature 413 431 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00575 Cca-Chr4 5793609 5800427 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00575 - - gmx:100777588 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00575 04 5793609 5800427 Cca04g00575 04 5793609 5800427 ECH