Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00554 ATGGCTCGTACCAAGCAAACCGCAAGGAAGTCCACCGGAGGAAAGGCTCCGAGGAAGCAGCTGGCGACGAAGGCCGCACGTAAGTCTGCTCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGTTTCAGGCCGGGCACGGTGGCGCTGAGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTTCTCATCAGGAAGCTTCCTTTCCAGAGGCTGGTGAGGGAAATCGCTCAGGATTTCAAGACCGATCTCCGATTCCAGAGCAGTGCTGTCTCTGCTCTTCAGGAAGCCGCCGAGGCCTATCTCGTTGGTCTTTTTGAAGACACAAATCTCTGCGCTATTCATGCCAAGAGAGTCACCATTATGCCCAAGGATATTCAGCTTGCTCGTAGGATTAGGGGCGAGAGGGCTTAG 411 0.5693 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00554 136 SUPERFAMILY Histone-fold 2 133 IPR009072 GO:0046982
Cca04g00554 136 PANTHER HISTONE H3 1 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 MobiDBLite consensus disorder prediction 1 43 - -
Cca04g00554 136 Gene3D Histone, subunit A 2 136 IPR009072 GO:0046982
Cca04g00554 136 ProSitePatterns Histone H3 signature 2. 67 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 PRINTS Histone H3 signature 58 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 PRINTS Histone H3 signature 80 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 PRINTS Histone H3 signature 98 114 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 PRINTS Histone H3 signature 114 135 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 PANTHER - 1 136 - -
Cca04g00554 136 SMART h35 34 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca04g00554 136 Pfam Core histone H2A/H2B/H3/H4 1 132 IPR007125 GO:0003677
Cca04g00554 136 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00554 Cca-Chr4 5487088 5487803 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00554 K11253 - pda:103704350 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00554 04 5487088 5487803 Cca04g00554 04 5487088 5487803 ECH
Cca10g00352 10 3737643 3738053 Cca04g00554 04 5487088 5487803 PCT