Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00553 ATGGAGAAATACTTGGTTTCGCAAAAACCCTCAATTGAAAATGTTCGGCCTCTTCGAAGAAGCCATTGGAAGAGGAGTTCGGTTGAACTAAATGGGAGATTTGAGCCTAACTATCGTCATCAGATGATGGATCTGCTAATGCGCTCCTATTCTGAGGTTGGAGTGTTTCCGCATTTGTATCAAGTGGATGGGTCGCCGTGCCAAACTCATACGAATCGATTGGTTAGTGAGGCAAATGGTGATGGCTATCTTCCATGGAGAAAGCAAGGCATCACTGCAGTAGATTTTGACAGCAAGGGAATATACTTGGTGTCTGTGACAAAATCAGGTTGCCTAACAGTTCACGACTTTGAAGCTCTTTATTGCCAGATACCTGAATTAACGTGCTTGAGGGAAGATGAAAGCAAGCACTTAATGCACCTCTCACTAAATCGACAACTTGATGCTGTCAGATGGAATCCTCTTAATCAGGATGAGGTTGTTTGTGCATCTATAAAAAGTAATGAACTACTCATATTCGATGTTGGATATATCTCATCAGATCCAGTTGAAGTGTTAAGAACAAGACTTACAACCCCAGTTCATGGATCCAGCATACCCAAAGGTCTCACTGATGTAGCTTTTACGTCAAATGACACAAGGATACTTGCTTCTGATACATTTGGTGCAATTAATGTCTGGGATAGAAGAGTGAATGTTCTACCTTGCCTTGAGTTCGAATCTGCTTCATGTTTTACGCTTAACCGCATCCAATTAAATGCAGATAATCAGATTATCTATGGCGCTGGGAAAGATGGGTTCGTGTATGTATGGGATATTCGTGGTGGAAGAGCATCCGCTACTTTTCAAAGTCACAAAGAGATACGCCATCAACCTGTAACATCAGTGAAGTTGGCAACATTGCTAGAGAAGATTGGATCTTTGAAGGCACAGGCAGATATTGTTCCCAAGGAGATTCACTCTATCGATATTAATCCATCATGCCCATATCAGTTAGCATTCCATATTGTCGATGGTTGGTCAGGCGTTTTGGATATTAATAATTTTCAAGTTACACATATACATTGCCCACCCCCTTTTTGGTTAAACGATACCTATGTTCACCCTGATCTATCATATACAGCAAAACCTGCATGGTTATCAACGTGTTCGATCTATGTGGCTGAGTCATCATCTGGTTCTGGCATTAATCTCCTAGATTTCTATCCCAGCGCCAACTCACCTAGCCATGTGGATTACGAGGAGGATATGCAAGAAATTTCGAGGCGAAACAACCAAAGTAATCAGAACAGATTTATTTCTTTATCTGAAGGAGCTATCTCATGTGCCGCTCACCCTTTGTATAATGCTATCGTAGTGGGAACTAAGAAAACTTCTTTGCTCGTGATTTCCCAAAGACAAGAGTCGTGCAGAAGTGAAGATTAG 1425 0.4147 MEKYLVSQKPSIENVRPLRRSHWKRSSVELNGRFEPNYRHQMMDLLMRSYSEVGVFPHLYQVDGSPCQTHTNRLVSEANGDGYLPWRKQGITAVDFDSKGIYLVSVTKSGCLTVHDFEALYCQIPELTCLREDESKHLMHLSLNRQLDAVRWNPLNQDEVVCASIKSNELLIFDVGYISSDPVEVLRTRLTTPVHGSSIPKGLTDVAFTSNDTRILASDTFGAINVWDRRVNVLPCLEFESASCFTLNRIQLNADNQIIYGAGKDGFVYVWDIRGGRASATFQSHKEIRHQPVTSVKLATLLEKIGSLKAQADIVPKEIHSIDINPSCPYQLAFHIVDGWSGVLDINNFQVTHIHCPPPFWLNDTYVHPDLSYTAKPAWLSTCSIYVAESSSGSGINLLDFYPSANSPSHVDYEEDMQEISRRNNQSNQNRFISLSEGAISCAAHPLYNAIVVGTKKTSLLVISQRQESCRSED 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00553 474 SUPERFAMILY WD40 repeat-like 87 373 IPR036322 GO:0005515
Cca04g00553 474 SMART WD40_4 179 228 IPR001680 GO:0005515
Cca04g00553 474 SMART WD40_4 71 116 IPR001680 GO:0005515
Cca04g00553 474 SMART WD40_4 232 272 IPR001680 GO:0005515
Cca04g00553 474 Gene3D - 66 471 IPR015943 GO:0005515
Cca04g00553 474 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 473 - -
Cca04g00553 474 Coils Coil 410 430 - -
Cca04g00553 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 281 IPR001680 GO:0005515
Cca04g00553 474 PANTHER WD40 REPEAT PROTEIN 12, 37 1 473 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00553 - - gmx:100780441 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00553 04 5469712 5485588 Cca04g00553 04 5469712 5485588 ECH