Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00551 ATGTCCACGACCACCGCATCCGCCGCCGACTCTCCCTCCCGCCGCCTCCAAACGCCTACGCTCGACCGGGAGTCCGCGGCGCTGCTGCACTCGATCTCCGAGCACGGCGGCTACGCCTACGTGAGCATggcggcgctggcggccggcggcgaccttcgcgcggcggaggcagcgcgcgAGATGGCGTGGGAGCAGCTGCACTCGGGGCCGTGGCACTCGGTGCTGCCGGCGTGGCGCGACGCGTACTCGATGGCGTGCCTCCACGTGGCGCGCCACCACTACGCCAACGGAGAGTTCAGGGAGGCGCTTAGGGTTTTGGATTTGGGAATCATCATGGGAGGGACGCTCCTCCGAAAGGATTTGGACTCCGCCGTTGAGAAAGTGGCGGAAGAAACACGGAGGGGCGGCGCTAGGGTTTCCGATTTGGGGAACTCCGAGCACCGACTCGTGGATCGCGAGTTTAATGTAGCAGAGGTGCTCCAACTTTTACCTATGAAGTCACTTTCTTCGAAGCTTGTGGTGAAGAAATCAGAGTTGTCGTTGGAGAAATTCCTGAAGGATCATTACCTGTCTGGCTCCCCGGTTATTATCAGTGATTGTATGGCTCACTGGCCGGCCAAGATGAAATGGAATAATGAAGACTACTTGCTAAGTGTTGCTGGTGACCGCACGGTTCCGGTTGAGGTTGGGAAAAACTATCTATGTACTGAGTGGAAGCAAGAGCTAATTACATTTTCAGAGTTTCTTCAGCGGATAAAGTCTGATGGATGTTCTCCTGGTGGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAAAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTAACCCCATTACATCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCCTCATCTTTTTCTGAGGAACTTTTTCCCTACTCTGGTACCATGCTCAGCAACTCCAGCCAGGTTGATTTAGATGACATAGATGAAGGGAAGTTTCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTAGAGGAAGGCGAAATGTTATATATCCCACCAAAATGGTGGCACTATGTGCGGTCTTTGACTACCAGTTTATCGGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCGGATACATCCTAA 1245 0.4835 MSTTTASAADSPSRRLQTPTLDRESAALLHSISEHGGYAYVSMAALAAGGDLRAAEAAREMAWEQLHSGPWHSVLPAWRDAYSMACLHVARHHYANGEFREALRVLDLGIIMGGTLLRKDLDSAVEKVAEETRRGGARVSDLGNSEHRLVDREFNVAEVLQLLPMKSLSSKLVVKKSELSLEKFLKDHYLSGSPVIISDCMAHWPAKMKWNNEDYLLSVAGDRTVPVEVGKNYLCTEWKQELITFSEFLQRIKSDGCSPGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSFSEELFPYSGTMLSNSSQVDLDDIDEGKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSDTS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00551 414 SMART cupin_9 263 413 IPR003347 -
Cca04g00551 414 ProSiteProfiles JmjC domain profile. 272 414 IPR003347 -
Cca04g00551 414 PANTHER - 36 407 - -
Cca04g00551 414 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 36 407 - -
Cca04g00551 414 SUPERFAMILY Clavaminate synthase-like 178 406 - -
Cca04g00551 414 Pfam Cupin-like domain 183 407 IPR041667 -
Cca04g00551 414 Gene3D Cupin 172 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00551 Cca-Chr4 5452451 5456597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00551 167 405 Acyl Lipid Metabolism Gene Families AT3G45880 23.649 1.70e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00551 K24444 - gmx:100813075 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00551 04 5452451 5456597 Cca04g00551 04 5452451 5456597 ECH