Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00544 ATGCTTATGCAACAAATTAATGTATCAAATTCAAGTGGATCTTATCTCATCCTTCAGAAGCCTTGCATTACTAACCCTTGTTTACAGGTTTGGTCAAGGCCATCATGGTTCCCAAAGCAAAGGAAGCAAAAAAGGGTTACTACTCATCATGATGGGTACAGGAGCAACATCAAAGCTGTGGCTGTGAGTACGGAAGTTGAAAGCAAAGCAGTGAAGGTTAAAGCCACCATAACTGTTCAGCCAACGGTTGGTGGGTTTTTCTCAGAACTGAGTTCTGGTTTAGGCCGAGGGTTGGATGATATCAAGGATTTGCTCGGTCAATCACTTCTCGTGGAGCTTCTTAGTGCCGAGCTTGACGAAAAGACGAAACTAGAGAAGCAAAGTATAAAAGATTATGCCCAAAAGACGCATCAATCGACACAAGAGGTTAAGTACGTGGCGGAATTTGAAGTGCCGCAAAGTTTTGGAGAGATAGGGGCTATTCTGGTGGAGAATGAGCATCACAAGGAAATGTTCATCAAGGACATTGTTCTGGATGGCTTCCTCTTGGGTCCAGTTACTTTTTCATGCGACTCGTGGGTTCACTCCAAGTTTGATAACCCTGTTAAGAGGGTGTTTTTCTCCAACAAGTCATATTTGCCATCAGAAACACCAGAAGGAGTGAAGAGGCTAAGAGAAGAGGAACTGGAACATTTAAGGGGGAACGGGCAAGGTGAACGGAAGGTTCATGAGCGAATATACGATTACGATGTGTACAACGATCTTGGAGATCCAGATAGCAGCGAGGAACTCAAAAGACCCGTTCTCGGTGGCTCCCAACATCCTTATCCAAGGCGTTGCAGAACGGGAAGGGATCGCTCCCACAAAGACCCGTTGTCGGAGAAAAGAAGTAGCTCCGTGTATGTGCCTAGAGACGAATGCTTCTCTGAAGTAAAGCAACTTACTTTTCAAACAAAGACCCTATACTCTGCGTTGCATGCACTCATACCCACCATCAGGACAGGGATTGTTGACAAAAATCTTGGCTTCCCTGTCTTCTCCGCCATCGATGATCTTTTCGATGAGGGCCTTAGCTTGCCTCCTCTCAAAGGCAAAGGCATTCTCAATAATCTCTTGCCTAGGCTCGTCAAGTTTGTCAGGGATACTGAAGAGGAAATTCTCCGTTTTAACCCTCCCGCAACCATGGACAAGGACAGGTTCTTTTGGTTAAGAGACGAGGAATTTGGAAGACAAACTCTTGCGGGTCTAAACCCTTGTTGCATCCAATTGGTCACGGAATGGCCATTGAAAAGCAAACTAGACCCCGAGATTTATGGCCCTGCGGAATCAGCCATCACTACCCAAATAATTGAGCAGGAAATTAAAGGATTCCTTACGGTTGAAGAGGCCATTAAACAGAAGAAACTCTTCATGCTGGACTACCACGATTTGCTGTTGCCATTAGTGAAGGATGTTCGACAACTTGAAGGCACAACACTATACGGATCAAGAACACTCTTCTTCCTAACCCACGAAGGCACGTTAAGACCACTGGCTATTGAGCTTACTCGTCCACCCATGGACGGAAAGCCACAGTGGAAGGAAGTCTTCACACCTTGCTGGCACTCGACCGGCGTCTGGCTTTGGAGGCTCGCCAAACTCCACGTCCTCGCCCACGACGCCGGTTACCACCAACTCGTCAGCCACTGGCTGAGAACACACTGTGCGACGGAGCCTTACATTCTGGCGACAAACCGCCAACTGAGCGCGATGCACCCGATCTACAGACTACTGCACCCGCACTTCCGTTACACGATGGAGATCAACGCGCTGGCGCGTGAGGCGCTGGTAAACGCGAACGGAATAATAGAGAGCAGTTTCACTCCGGGGAAGTTCTCCATCCTGCTCAGTTCAATCGCCTACGACAAACAGTGGCAATTCAACCTCCAATCCCTCCCCGCAGATCTCATCCACCGAGGCATGGCGGTCAAAGACCAAAATGCCCCTCACGGCCTCAAACTAACCGTCGAAGACTACCCTTACGCCAACGACGGCCTCCTCCTCTGGGACGCCCTCAAAGGATGGTTCACCGATTACATCTACCGCTATTACCCCGACAACGGAGCAATCCAATCCGACACAGAGCTCCAAGCCTGGTGGCAAGAGATCGTCAACGTTGGCCACGCCGACAAGAAAGACGAACCCTGGTGGCCGCAGCTCAAAACAAGACAAGACCTAATCGAAATCCTTACCACCATTGCGTGGACTGCCTCCGGCCACCACGCGGCGGTGAACTTCGGACAGTTCTCCTTCGCCGGGTACTTCCCGAACAGGCCTAGCGTTGCGAGGAACAAGATGCCGGTGGAGGATCCTTCGGATCCTGAGTGGGAGCTGTTTCTTCAGAAGCCGGAGGTGACTATGCTCAAGTGTTTTCCGTCGcagattcaggccacgacggtgatgacggtgctggacattctgtcgaaccactcgccggacgaggagtatctcggggagacggtggagccggcgtgggaggaggacgctcttgtgaaggcggcgtttgagaagtttagaggcaagttgattgagcttgaagggttgattgatgagaggaatgctgacaagtctaggaggaaccggaacggtgcagggattgtgccctatgagcttcttaagcccacttcggagcctggtgttacggctaagggagttccttatagtatatctatttga 2715 0.442 MLMQQINVSNSSGSYLILQKPCITNPCLQVWSRPSWFPKQRKQKRVTTHHDGYRSNIKAVAVSTEVESKAVKVKATITVQPTVGGFFSELSSGLGRGLDDIKDLLGQSLLVELLSAELDEKTKLEKQSIKDYAQKTHQSTQEVKYVAEFEVPQSFGEIGAILVENEHHKEMFIKDIVLDGFLLGPVTFSCDSWVHSKFDNPVKRVFFSNKSYLPSETPEGVKRLREEELEHLRGNGQGERKVHERIYDYDVYNDLGDPDSSEELKRPVLGGSQHPYPRRCRTGRDRSHKDPLSEKRSSSVYVPRDECFSEVKQLTFQTKTLYSALHALIPTIRTGIVDKNLGFPVFSAIDDLFDEGLSLPPLKGKGILNNLLPRLVKFVRDTEEEILRFNPPATMDKDRFFWLRDEEFGRQTLAGLNPCCIQLVTEWPLKSKLDPEIYGPAESAITTQIIEQEIKGFLTVEEAIKQKKLFMLDYHDLLLPLVKDVRQLEGTTLYGSRTLFFLTHEGTLRPLAIELTRPPMDGKPQWKEVFTPCWHSTGVWLWRLAKLHVLAHDAGYHQLVSHWLRTHCATEPYILATNRQLSAMHPIYRLLHPHFRYTMEINALAREALVNANGIIESSFTPGKFSILLSSIAYDKQWQFNLQSLPADLIHRGMAVKDQNAPHGLKLTVEDYPYANDGLLLWDALKGWFTDYIYRYYPDNGAIQSDTELQAWWQEIVNVGHADKKDEPWWPQLKTRQDLIEILTTIAWTASGHHAAVNFGQFSFAGYFPNRPSVARNKMPVEDPSDPEWELFLQKPEVTMLKCFPSQIQATTVMTVLDILSNHSPDEEYLGETVEPAWEEDALVKAAFEKFRGKLIELEGLIDERNADKSRRNRNGAGIVPYELLKPTSEPGVTAKGVPYSISI 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00544 904 SUPERFAMILY Lipoxigenase 213 904 IPR036226 -
Cca04g00544 904 Gene3D - 419 553 - -
Cca04g00544 904 ProSiteProfiles PLAT domain profile. 86 208 IPR001024 GO:0005515
Cca04g00544 904 Gene3D - 332 418 IPR027433 -
Cca04g00544 904 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 62 212 IPR036392 GO:0005515
Cca04g00544 904 Gene3D - 554 902 - -
Cca04g00544 904 Gene3D PLAT/LH2 domain 72 230 - -
Cca04g00544 904 PRINTS Lipoxygenase signature 539 556 IPR013819 GO:0016702|GO:0046872
Cca04g00544 904 PRINTS Lipoxygenase signature 557 574 IPR013819 GO:0016702|GO:0046872
Cca04g00544 904 PRINTS Lipoxygenase signature 577 597 IPR013819 GO:0016702|GO:0046872
Cca04g00544 904 MobiDBLite consensus disorder prediction 278 298 - -
Cca04g00544 904 SMART LH2_4 71 209 IPR001024 GO:0005515
Cca04g00544 904 ProSitePatterns Lipoxygenases iron-binding region signature 1. 557 571 IPR020833 GO:0016702|GO:0046872
Cca04g00544 904 Pfam PLAT/LH2 domain 126 207 IPR001024 GO:0005515
Cca04g00544 904 PRINTS Plant lipoxygenase signature 178 196 IPR001246 GO:0016491
Cca04g00544 904 PRINTS Plant lipoxygenase signature 204 225 IPR001246 GO:0016491
Cca04g00544 904 PRINTS Plant lipoxygenase signature 243 259 IPR001246 GO:0016491
Cca04g00544 904 PRINTS Plant lipoxygenase signature 275 294 IPR001246 GO:0016491
Cca04g00544 904 PRINTS Plant lipoxygenase signature 340 361 IPR001246 GO:0016491
Cca04g00544 904 PRINTS Plant lipoxygenase signature 387 403 IPR001246 GO:0016491
Cca04g00544 904 PRINTS Plant lipoxygenase signature 426 445 IPR001246 GO:0016491
Cca04g00544 904 PRINTS Plant lipoxygenase signature 494 518 IPR001246 GO:0016491
Cca04g00544 904 PRINTS Plant lipoxygenase signature 817 831 IPR001246 GO:0016491
Cca04g00544 904 CDD PLAT_LH2 71 209 IPR042057 -
Cca04g00544 904 ProSitePatterns Lipoxygenases iron-binding region signature 2. 584 594 IPR020834 GO:0016702|GO:0046872
Cca04g00544 904 PANTHER LIPOXYGENASE 19 902 - -
Cca04g00544 904 PANTHER LIPOXYGENASE 19 902 IPR000907 GO:0016702|GO:0046872
Cca04g00544 904 Pfam Lipoxygenase 221 887 IPR013819 GO:0016702|GO:0046872
Cca04g00544 904 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 211 904 IPR013819 GO:0016702|GO:0046872
Cca04g00544 904 MobiDBLite consensus disorder prediction 257 298 - -
Cca04g00544 904 Gene3D - 231 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00544 Cca-Chr4 5393086 5401630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00544 151 904 Acyl Lipid Metabolism Gene Families AT3G45140 59.367 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00544 K00454 - gmx:100787202 1523.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00544 04 5393086 5401630 Cca04g00544 04 5393086 5401630 ECH