Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00541 ATGGCATTCAATGGCTATTTCGTTCTCGGACTCATTGGTCTTGTTCTTCTTAGTTCTTCCAAAGTTACATGCAAAGAAACAGTTACAGTTTCACCTATTATTGACATTTCACTCAATCGGAACAGTTTTCCTCAAGGCTTCATCTTTGGGGCAGGTTCTTCCTCATACCAGTTCGAAGGTGCAGCAAATGAAGGTGGTAGAGGACCAAGTGTATGGGACACCTTCACCCATAAATACCCAGAAAAGATCAACGACAGAAGCAACGGAGACGTAGCCATTGACTCATATCACCACTACAAGGAAGATATTGCGATGATGAAGGATATGAATTTGGATTCATATAGATTTTCCATATCTTGGTCAAGGATTCTCCCAAGAGGAAAGCTAACTGGAGGAATAAATCAAGAAGGAATCAACTATTACAACAATCTTATCAATGAGTTGCTCGCAAATGGTATACAACCACTTGTGACTCTTTTCCATTGGGATCTTCCCCAAGCATTAGAAGATGAATATGGTGGCTTCTTAAGTCCACGCATAGTGAAAGATTTTCAAGACTACGCAGAACTTTGCTTCAAAGAATTTGGTGATAGGGTAAAGTATTGGGTTACTTTGAATGAGCCATGGAGTTATAGTAATAATGGCTACGCAAATGGACGAATGGCACCAGGTCGTTGTTCTACATGGTTAAATTTAAATTGCACCGGTGGTAATTCTGCAACAGAGCCTTATTTGGTTACACACTATCAACTTCTTGCTCATGCAGCAGCTGTTCATGTGTACAAGATTAAATATCAAGAATCTCAAAAGGGCATAATTGGCATAACCTTGGTAGCTAATTGGTTTTTGCCTCTTAGAGATACCAAATATGATCAAAAGGCGGCTGAAAGAGCAATTGACTTCATGTTTGGATGGTAA 918 0.3965 MAFNGYFVLGLIGLVLLSSSKVTCKETVTVSPIIDISLNRNSFPQGFIFGAGSSSYQFEGAANEGGRGPSVWDTFTHKYPEKINDRSNGDVAIDSYHHYKEDIAMMKDMNLDSYRFSISWSRILPRGKLTGGINQEGINYYNNLINELLANGIQPLVTLFHWDLPQALEDEYGGFLSPRIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSNNGYANGRMAPGRCSTWLNLNCTGGNSATEPYLVTHYQLLAHAAAVHVYKIKYQESQKGIIGITLVANWFLPLRDTKYDQKAAERAIDFMFGW 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00541 305 SUPERFAMILY (Trans)glycosidases 37 305 IPR017853 -
Cca04g00541 305 Pfam Glycosyl hydrolase family 1 40 305 IPR001360 GO:0004553|GO:0005975
Cca04g00541 305 PANTHER GLYCOSYL HYDROLASE 3 305 IPR001360 GO:0004553|GO:0005975
Cca04g00541 305 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 305 - -
Cca04g00541 305 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 47 61 IPR033132 -
Cca04g00541 305 Gene3D Glycosidases 24 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00541 Cca-Chr4 5333422 5336701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00541 6 305 Glycoside Hydrolase AT5G44640 57.667 4.85e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00541 - K01188 gmx:100784723 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00541 04 5333422 5336701 Cca04g00541 04 5333422 5336701 ECH