Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00531 ATGGCTCCAGGAGACGTTTGTCCGACTGAGGATGCAATTAATGTATTCATAGAGCTCTTGGTTGACCCATTGCTGCCAGCAAAATCATGTGTCCAGGATACTCCCACACTATCTCAACAGAAGTTAGTTGCAAAACAGGTGCGTTCAGTTGTCTTACTGTACAACTACTACCACAGGAAACGACATCCAGAGCTAGCATATCTGCCATTTAATGAATTTTGCAAGGTGGCTGTGGTTTCGAGGCCAGCTTTATTAGCATATATGCAATTCATGCAAAATTTAAATGAAGTAGAGCTCACTGATGTGGAGACGCAGCTATCCTTGACAGAAAAAATAATTATGGATGCATGTGATGTATGTAAATGTTTAGATGCATCAAAGAATGTTCCTAATATACAGGGATGGCCCATTACAAAAGTTGCTATATTTTTAGTTGATAGTAAGAAGGAGAACTGTTTTTTGCTGTTTAGTTCCATTACCAGTGGGGTATGGTCTCTAGTTGAAAAAGATCTGGACACCTCCAGTCAAAGTTCTCTGGTTGAAAAAGGTCCGGAAACCTCCAGTCAAAGTTCTGATGTTACATCAGGAACAAAACAGTACAAAAAGAAAAGAGTCATTAGAAAGCCTATCAAAGATGAATCAAAAGTTGATGAAGATATATTTCTGCAAGTTGGGTATTCTGCTATAAGGGAAGCCACAGGTATCAATGACACTGATATTAAGGTTTTGGAAAGTGACACTGTCTATTCTGAGAGCAAAGAGAAGGCAGCATCTCGCTTTTATATAATGCAGTGCTCCCAATCGACCAATGAAGAAGCTATTCAAGTTCCTCTCAAAGATCTAGTTAAAAGCTTGCATGGTCCTTTGATCAGTAAGAGTTCTAGAAGTTGGGCGATCACTCCAGTAGTTGATTACTTCCATGTGCTTCCTTACTCTGAAATAATCTCAAAGTGGATTTTAAGAGTAGCATTCTCAAATAGTTTGCTAGATTCAAGGGTAACAGAGAAAAATATAAAGGTGGGCACCCCTGAAGTAACAGAATTATATGTAAATAAGGAGACATTTACTGCTGTTGATAATAAACCAAATGGTGATAATATTGATTCACTGAAGCAGAAAGAGAACAATGGAAGTTGTACACCTGCATTATCTGATTCTATCAGTGAGCCCATGGAAATAATTGTGAATGGATATCCAATTTTCAAATCCCAGTACAAAGAAAAATGCAAGAATATTATTGCCAATACTGTACAAGTTGGTGAAGATCAAGAAAAAAACAATCTAACTGTGAAGTATAACTCTAATGGCTCTGCAAGTGGTGTTAAGGCCATAGAGGTTGATTCAGCAAGGATGATTGCTGAAGGTGGAATCAACAATCTTGATTCCAATAGGCCTAATACCTCATCTGAAAAAGGCACACTTGATGACAGTACACAGACTACAAATCATTCTGACTCAGATCCAGTGAAGCTCCAAATTCTTTCAGATTCGAAAAATATATTGTCTCAAACTGCCCTAGCTTCTTTGCTACGAAAGAGGAATGAATTGGCCCTTCAGCAGCGCAAGATAGAGGATGAGATAGCTGTTTGCGATAGAAAAATTCATACAATGGTAACGGAAGGCTGCAATGATACATGGATAAGGAATCAAGAAAGGACATGTGAACAACAAAGCTTACCTCTTAAGAGAAAAAAATTGTCAGAGGCTGTCATTACCATGCAAAGTCCATGCCAGGAACTAGACGATGTATGTCGCGCAAACAATTGGGTCCTACCAACTTATCATCTATCACATTCAGATGGTGGATTTAAAGCCAATGTAACCGTTAAAGGAGTGGACTTTCAGTGTTCATTTGAGGGTAACATGGGTTCAAATCCTCTTGAAGCTAGAGAATCAGCTGCAGCTGAGATGTTGACTAACTTAAGAAGTATGGCTAAATTAGCTCAGTGA 1950 0.3867 MAPGDVCPTEDAINVFIELLVDPLLPAKSCVQDTPTLSQQKLVAKQVRSVVLLYNYYHRKRHPELAYLPFNEFCKVAVVSRPALLAYMQFMQNLNEVELTDVETQLSLTEKIIMDACDVCKCLDASKNVPNIQGWPITKVAIFLVDSKKENCFLLFSSITSGVWSLVEKDLDTSSQSSLVEKGPETSSQSSDVTSGTKQYKKKRVIRKPIKDESKVDEDIFLQVGYSAIREATGINDTDIKVLESDTVYSESKEKAASRFYIMQCSQSTNEEAIQVPLKDLVKSLHGPLISKSSRSWAITPVVDYFHVLPYSEIISKWILRVAFSNSLLDSRVTEKNIKVGTPEVTELYVNKETFTAVDNKPNGDNIDSLKQKENNGSCTPALSDSISEPMEIIVNGYPIFKSQYKEKCKNIIANTVQVGEDQEKNNLTVKYNSNGSASGVKAIEVDSARMIAEGGINNLDSNRPNTSSEKGTLDDSTQTTNHSDSDPVKLQILSDSKNILSQTALASLLRKRNELALQQRKIEDEIAVCDRKIHTMVTEGCNDTWIRNQERTCEQQSLPLKRKKLSEAVITMQSPCQELDDVCRANNWVLPTYHLSHSDGGFKANVTVKGVDFQCSFEGNMGSNPLEARESAAAEMLTNLRSMAKLAQ 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00531 649 SUPERFAMILY dsRNA-binding domain-like 573 642 - -
Cca04g00531 649 MobiDBLite consensus disorder prediction 361 383 - -
Cca04g00531 649 MobiDBLite consensus disorder prediction 177 196 - -
Cca04g00531 649 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 575 643 IPR014720 -
Cca04g00531 649 Gene3D - 547 643 - -
Cca04g00531 649 MobiDBLite consensus disorder prediction 459 488 - -
Cca04g00531 649 Coils Coil 506 526 - -
Cca04g00531 649 MobiDBLite consensus disorder prediction 456 488 - -
Cca04g00531 649 PANTHER ALEURONE LAYER MORPHOGENESIS PROTEIN 1 646 - -
Cca04g00531 649 CDD DSRM_SF 578 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00531 Cca-Chr4 5190966 5200667 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00531 - - pvu:PHAVU_011G055000g 934.865