Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00523 ATGGCAACCTCGTTATTCCGCAGCATAAGGAGAGCTTCCATTGCTCTCAGATTCTCGTACGCTACCTCGTTTTCGGCTTCTCCCAGGTCAGTTGGGAGGACTCAGAAGCGTATGTGTTATCCTTTGAGGCACTGTGTCCCGTTTGGAGGGCAGGGTTATTGGTGGGGTTTAAGAGATTTGAGCTATGGAAGGGTGAACCTTGTGATAACGGGAGGGAAGACCAAGTTTGAGACTCATGAGGTTGAGGCTCCGAAGAAAGACAAGTGgaagacgaagaagaggttgaagatgcagaggaagagagagaaagagaagaggagagCGGCCAACAGGAAAGATCCCCGTCGACTTGGTGTCAAAGGGAAGAAGAAGAAACAGAGATTTGCCAGTGCAGAAGAGAGGATCAAGTACAAGATTGAAAAAGCAAGAATTAAAGAAGCATTGCTCATTGAAAGGCTCAAACGATATGAAGTTCCTAAACTTCAGGGTCCTGTTGTAAAGCCTGTTGGCTTGACGGGGGAGGAACGTTTTTATTTGAAGAAAATGGCTCAGAAGAGATCTAATTATCTACAAATTGGCAGAAGAGGATTGTTTGGAGGTGTTGTTCTCAATATGCATATGCATTGGAAGAAACACGAGACTGTTAAGGTCATATGCAAGCCTTGTAAGCCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGATTGAGTGGTGGTATTCCACTTCAAATAATTGGAGATGACACAATAATATTTTATCGCGGAAAGAACTATGAACAACCTGAGGTTATGTCACCAATTGATACCCTGTCCAAGAAAAAGGCACTTGAAAAGTCTAAGTATGAGCAATCCCTGGAGTCAGTGAGGCGCTTCATTGCTATTGCTGAGAAAGAATTAGAGCTATATTACAGGCACATTGCCCTTTATGGTGATCCAAACAACAGAAATCCCTTGTCAATGCTGGATGATCCAAGTGAAAAAGGGAATCATGGAATTCCAGATAACAAAATCTGTGACTTAAAAAACAATGATTATTTTTCAGCCACTCTTTCAGAGACTGAAGCAGATTCCACGGAAATGGAGCTATCAGAGATAGAAGATGAAAACACGTCAATGAATGAATCAGATTCTGAAGAGGACAGCATGTTGGATTCCAATGGTGATCAAGAAAGAGAGGTATATTTTACTAAAATGCACGATGAAAGTGTAACCTCCGCCACATGTTCTTCATCAATATCTAAACATAGCCACTACTATAATAATCAATATTTATAA 1278 0.3967 MATSLFRSIRRASIALRFSYATSFSASPRSVGRTQKRMCYPLRHCVPFGGQGYWWGLRDLSYGRVNLVITGGKTKFETHEVEAPKKDKWKTKKRLKMQRKREKEKRRAANRKDPRRLGVKGKKKKQRFASAEERIKYKIEKARIKEALLIERLKRYEVPKLQGPVVKPVGLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAQELARLSGGIPLQIIGDDTIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNNRNPLSMLDDPSEKGNHGIPDNKICDLKNNDYFSATLSETEADSTEMELSEIEDENTSMNESDSEEDSMLDSNGDQEREVYFTKMHDESVTSATCSSSISKHSHYYNNQYL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00523 425 MobiDBLite consensus disorder prediction 353 391 - -
Cca04g00523 425 Pfam CRS1 / YhbY (CRM) domain 171 255 IPR001890 GO:0003723
Cca04g00523 425 Coils Coil 349 376 - -
Cca04g00523 425 Coils Coil 92 112 - -
Cca04g00523 425 MobiDBLite consensus disorder prediction 89 106 - -
Cca04g00523 425 ProSiteProfiles CRM domain profile. 169 266 IPR001890 GO:0003723
Cca04g00523 425 SUPERFAMILY YhbY-like 170 265 IPR035920 -
Cca04g00523 425 MobiDBLite consensus disorder prediction 358 384 - -
Cca04g00523 425 MobiDBLite consensus disorder prediction 80 126 - -
Cca04g00523 425 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 1 385 - -
Cca04g00523 425 Gene3D - 171 269 IPR035920 -
Cca04g00523 425 SMART CRS1_YhbY_2 171 255 IPR001890 GO:0003723
Cca04g00523 425 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 1 385 IPR040286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00523 Cca-Chr4 5108838 5112988 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00523 - - gmx:100796393 673.7