Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00520 ATGCTTCAGAAAACGCAAGCCATCGAAGAACTCGAATCATCTAGTAGCTCAATCAAGTTAAAGACACTACCTTTCTGCTTTGTTCTCGCCCAATCCCTTGGGAAAGACTGTGTTGTCTTGTTTGATTGTGGCATTAGAAGGGGTTTTGAGAAATGGAAGAAAAATATAGGGTATTCGCATGTGGGGCTGAGTTATGAGACTGCTGTAGAAGGGCATTATTGGAGGATAATTACATCTGCTTTTTCCCATATAAGTGTTATTCATCTTGTTTTTAATATGAGTGCACTTTGGAGTCTTGGGGTGGTAGAGCAGCTTGGTCACTTAGGCCTTGGTGTTGAGTACTACTTGCAGTACACACTTGTGTTGGTTGTTGTATCAGGAGTGCTGGTTCTGGCAATGTATCATTTATTGATTCAGAGATTCAAGCTTGAGTATTTTCGTCGAGTGACGGCTGTTGGGTATTCCTGTGTTGTTTTTGGGTGGATGACAATTCTTTCTGTGAAGCAACCATCTTCCAAGTTGGATCTCTTTGGGTTTCTTTCTCTTCCCATCAGTTTTGCTCCGTTTGAGTCGCTTATTTTCACTTCAATCATTGTTCCTCAGGCGAGTTTTCTTGGCCATTTGTCAGGGATTGTTGTTGGATATGCTATAGCATGGGGTTTGATTCATGGGATGACCAATTACTGGGCACTTTCCTTGTTGGGATGGATTGTGCTTGTATTTGTTTTGAGTTTGAAGAGATCTGGTGCGCTTGACCTAAACTTTCTTGAGATTGAATCTGTTACTGATCCTTCCTTGCCATCTGTGCGGTTTTTGGCATCAAACAGTGGCCGAACACTGCAGATGAGTGCGTTGCCAAATGGAAATGTTGAAATTGTCTAA 882 0.4195 MLQKTQAIEELESSSSSIKLKTLPFCFVLAQSLGKDCVVLFDCGIRRGFEKWKKNIGYSHVGLSYETAVEGHYWRIITSAFSHISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVVSGVLVLAMYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLIHGMTNYWALSLLGWIVLVFVLSLKRSGALDLNFLEIESVTDPSLPSVRFLASNSGRTLQMSALPNGNVEIV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00520 293 PANTHER RHOMBOID-LIKE PROTEIN 13 49 293 - -
Cca04g00520 293 Gene3D - 26 223 IPR035952 -
Cca04g00520 293 PANTHER RHOMBOID PROTEASE 49 293 - -
Cca04g00520 293 SUPERFAMILY Rhomboid-like 59 221 IPR035952 -
Cca04g00520 293 Pfam Rhomboid family 70 223 IPR022764 GO:0004252|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00520 Cca-Chr4 5080141 5081363 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00520 - - gmx:100818954 456.062