Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00517 ATGGGTTTGGAATCTGTGGGAGATTTGGCGATTAACGTTATTCTGAAGAAATTAGGAGCAGAAGACATTGCGAGGGTGGCGTGTGCCAGCAAAAGGTTTAGGTCTTCCGCTTCCGAAGACACTCTTTGGATGAATCTCTGTTTCCATGAACTCGCTCTGACCCAACCCCAAGATCATCTAGGAAACCTTCTCCCTTCCTTCAAGGAATGTTATCAAACATGGAGAGGAGCTTTTTCTATGTATCCTTGGTCTCTTGTTAGGCGTGTAAAAAGGTGCTGGGATAGGATACAGACCTGGTTGGCCAATAATTTTCCTGAAGCTGAGGCCACTCTTTGTAAAGGTGCAACAGAAGCTGACATTGAGGAGTTGGAGAATGTATTAAAGGTGAAATTGCCACTTCCTACAAGGATCCTTTATCGCTTTCATAATGGACAAGAAATAGCGAAAACAGATCTGGAGACTAGCACATTTGGTAGTTCTTTGGGTCTAATTGGTGGCTACTCCTTCTACAGTCATTTGGTGAATGTTTATTTATTACCAATACGTCATATAATTCTAGAAACTCAGCAACATAGGCGTTGCAGGGGCTTTTTAAGAAGATCCAAGTTTGTTCTCATGGCTGCTTCATCCACACACAGTGAAAAGTTGTTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGAACTAGGAATATTCTTACTGATAGAGACATAATCCCTTGTGTACCTCATGATCTGATTCATTTACATCAGGAAGTGAATAGTGGAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCACCGTCTAGAACATGGCGTTATCAAACTTCGGGATGAAGTAAATGGCAGAAGCATTAATCTTTTCCCAGAAGAACCCCCTTTTTGTTCAACGGCTATTACTAATGGTGTGAAGGTTTGTGCTTCTGCGTTGGTTATCCCTGAGTTGATTGATCTTCAACATGACTTTGAAAAGTACTTGTTTGCTTATTCAATCCGCATGTCCCTTGAACCTCAAGGATGCATCATTAATGGAATGACCTTCAACTCTTGCCAGCTCCATTGGAGGCACTGGATCATCCGTGCCAATGATATTGTTGTATCTGATGTCAATGGAGAAGCTGTTATAGGACAGTTTCCACTTTTGCGTCCTGGTGCTAAAGAATTTGTTTATCAGAGTTGCACACCTCTACCAATATCATCAGGTTCCATTGAAGGTTCTTTTACATTTATACCTGGCAGATTGGCAGAGCCAAAAGGAGACCCTTTTCTAGCTACAGTGGCACATTTCCCGCTGCAGCTGCCAGAGTATATTTTCTGA 1332 0.4204 MGLESVGDLAINVILKKLGAEDIARVACASKRFRSSASEDTLWMNLCFHELALTQPQDHLGNLLPSFKECYQTWRGAFSMYPWSLVRRVKRCWDRIQTWLANNFPEAEATLCKGATEADIEELENVLKVKLPLPTRILYRFHNGQEIAKTDLETSTFGSSLGLIGGYSFYSHLVNVYLLPIRHIILETQQHRRCRGFLRRSKFVLMAASSTHSEKLFFLNCTNGQLYVGTRNILTDRDIIPCVPHDLIHLHQEVNSGEQQDAMLLWLEEHGHRLEHGVIKLRDEVNGRSINLFPEEPPFCSTAITNGVKVCASALVIPELIDLQHDFEKYLFAYSIRMSLEPQGCIINGMTFNSCQLHWRHWIIRANDIVVSDVNGEAVIGQFPLLRPGAKEFVYQSCTPLPISSGSIEGSFTFIPGRLAEPKGDPFLATVAHFPLQLPEYIF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00517 443 SUPERFAMILY SMI1/KNR4-like 92 199 IPR037883 -
Cca04g00517 443 PANTHER F-BOX PROTEIN SKIP16 1 443 - -
Cca04g00517 443 Gene3D ApaG domain 300 443 IPR036767 -
Cca04g00517 443 SUPERFAMILY ApaG-like 304 443 IPR036767 -
Cca04g00517 443 ProSiteProfiles F-box domain profile. 1 46 IPR001810 GO:0005515
Cca04g00517 443 PANTHER F-BOX PROTEIN SKIP16 1 443 - -
Cca04g00517 443 SUPERFAMILY F-box domain 13 76 IPR036047 GO:0005515
Cca04g00517 443 Pfam ApaG domain 327 415 IPR007474 -
Cca04g00517 443 ProSiteProfiles ApaG domain profile. 302 443 IPR007474 -
Cca04g00517 443 Gene3D - 8 97 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00517 K10290 - gmx:100809876 780.015