LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g00515	ATGAGTGATTCCAAGGTAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGGAAAGGTCTTCTATATGGATTTATGCGATTGTTTTCTATACCATTGAAAACAATCCGTGGAGCTAGTCGGTCGTTGAGAGTGGATCAATTTTGCAGTGTAGTGAATTTATCTTCCTCATTGCAGATAGAATTGgttccatgccttagagacaattatgcatatcttttacatgacgtggatacggggacagttggtgttGTTGATCCCTCTGAAGCTGCGCCTATCATAGATGCGTTGAGTAAGAAGAATCTAAATTTGACATACATACTGAACACTCACCACCATCATGATCAAACTGGTGGGAATGCAGAGTTGAAAGAAAGGTATGGGGCAAAGGTAATTGGTTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATCTATTTGAGTGATGGAGATATCTGGATGTTTGCAGGCCATGAGGTTCATATATTGGCCACACCTGGTCACACCGAAGCAGGTCATGTAAGCTTCTACTTTCCAGGATCTGGGGCAATTTTTACCGGAGACACCTTGTTCAGCTTATCATGTGGCAAGCTCTTCGAAGGAACCCCTGAACAGATGCTATCTTCTCTTAAAAGGATCATGTCTTTGCCAGATGATACAAGTATTTATTGTGGTCATGAATATACGTTGAGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGGAAACAAGGAACTTCAATCCTATGCTGCCCATGTAGCTCAGCTTAGAAATAAGGGCTTGCCCACGATTCCAACTACGCTGAAAACGGAAAAAGCTTGCAATCCATTTCTTCGCACATGGAGCATGGAAATCCGGCAAAAGTTAAATATTGCAGCCACAGCAGATGATGCAGAAGCTCTGGGTTTTCCGCGCCAAAGGAAACGCAGAACAAGACGAACAACAGCAATGGCGGTCGACGATCGGTTCGCAGATTTCAACCCTAAGACGTGCGTCGTTTTAGGCGGCACAGGATTCCTCGGAAGATCGTTGGTCCTGAGGCTGTTGAAACTCGGTAACTGGATCGTCCGAGTTGCCGATTCCGCTCACTCTATCCAACTCCACGACTCCGAGTCTCTCCTCGCTCAAGCTCTCTCTTCTGCTCGCGCTTCCTACTTCCACATCGACCTTCGCGATAAGCGCAACATTGCCAAAGTTCTTGAAGGTTCCTCTGTTGTCTTTTATATGGATGTTGCCAGCATCGATGTGAATGACTTCTATACTTGCTATACGCTCATAGTTCAAGGTGCAAAGAATGTCATTAGTGCGTGCCGAGAATGTAGAGTGAGACGCCTAATATATAACAGTTCTGCGGATGTTGTATTTGATGGTTTGCATGATATTCATGATGGAGACGAGTCGTTGGCGTATCCTTGGAAAATTGACGACATGTTAAGTGACCTAAAGGCTCAAGCAGAAGCTTTGGTCCTGAGTGTCAATGACATTGATGGCCTATTGACATGCTCTCTTCGTCCTAGTAATGTTTTTGGACCCGGTGACACAAAATTTGTGCCATATTTTCTGAAGTTAGCAAGATATGGTTTTGCAAAGTTTATTATAGGGACTGGTGACAATCTTTCAGACTTCACTTTTTCTGAAAATGTTACTCATGCACATATATGTGCAGAAAAAGCCTTAAATTTCCAAACAGTTTCTGTGGCAGGAAAGGCATTTTTCATCACAAATCTTGAGCCTATGAAATTCTGGGAATTTCTCTCAATTTTGTTGGATGGTCTTGGATATCAAAGGCCATTCATCAAACTTCCTGCTAATTTGGTGCAATATATTCTCTCAGTTTTAAAGTGGTTACATGAAAAGTTGGGACCCAGATACTTCAGTTATCCTTTATTAGCTCATTTTTTTCAGTTAGCTTTATATACCCGAACTTTCAACTGCCTTGCAGCTCAGAAAGATATTGGATACTCACCAATAGTCTCCCTTGAGGAAGGAGTCGCATTAACCATAGAATCATTCTCTCATTTAGCTAGAGACTCGTCCTTTTCAAGATGCTGCAGTGGAAAACAGTCAAAAGCCGATAAGCTGCTAGGTGGAGGAAAAGTGGCGGACATTTTGCTGTGGAGAGACGAGAAGAAATCCTTTACATATTTCCTTGTTATGGTTTTGTTGTTTTACTGGTTTTTCCTTTCCGGAAGAACTTTTATATCATCTGCTGCGAGGCTTTTGCTGTTTGCCACTTTAGTTTTTTATGGACATGGTTTTCTGCCATCAAAGTTATTTGGTCTTCATATACAAAGGATACCCATGTCTTGTTTTAAGATCTCTGATACAGTAGTGAAAGATTCAGTTACAACTACAGTGTATATATGGAACAAGGTTTTTCAAAATATAAGAGGACTGGCTCAAGGGGACGATTGGTCTACATTCTTCAAGATCGCAGTTTTTCTTTACGTTCTGAAGTTGATCCTGTCAAAGTTGTTGACAATATTGATAGGCATAGGTTTGGTGTTCTCATTTATGGCATTTTTTGTTTACGAGCAATATGAATCAGAAATTGATGGATTGGTGGATAATCTGTTCATCAGCTTGAAGGAGTTCATGATATATTTGATGAGAATTTCACCTGTTTCTATATCGCGCCTTCAGCATTATGAAGGACCAAGAAAAGTAAAAGACCTGAGATAG	2697	0.4016	MSDSKVRSGFCVWPDARQLCLRKGLLYGFMRLFSIPLKTIRGASRSLRVDQFCSVVNLSSSLQIELVPCLRDNYAYLLHDVDTGTVGVVDPSEAAPIIDALSKKNLNLTYILNTHHHHDQTGGNAELKERYGAKVIGSEIDKERIPGIDIYLSDGDIWMFAGHEVHILATPGHTEAGHVSFYFPGSGAIFTGDTLFSLSCGKLFEGTPEQMLSSLKRIMSLPDDTSIYCGHEYTLSNSKFALSIEPGNKELQSYAAHVAQLRNKGLPTIPTTLKTEKACNPFLRTWSMEIRQKLNIAATADDAEALGFPRQRKRRTRRTTAMAVDDRFADFNPKTCVVLGGTGFLGRSLVLRLLKLGNWIVRVADSAHSIQLHDSESLLAQALSSARASYFHIDLRDKRNIAKVLEGSSVVFYMDVASIDVNDFYTCYTLIVQGAKNVISACRECRVRRLIYNSSADVVFDGLHDIHDGDESLAYPWKIDDMLSDLKAQAEALVLSVNDIDGLLTCSLRPSNVFGPGDTKFVPYFLKLARYGFAKFIIGTGDNLSDFTFSENVTHAHICAEKALNFQTVSVAGKAFFITNLEPMKFWEFLSILLDGLGYQRPFIKLPANLVQYILSVLKWLHEKLGPRYFSYPLLAHFFQLALYTRTFNCLAAQKDIGYSPIVSLEEGVALTIESFSHLARDSSFSRCCSGKQSKADKLLGGGKVADILLWRDEKKSFTYFLVMVLLFYWFFLSGRTFISSAARLLLFATLVFYGHGFLPSKLFGLHIQRIPMSCFKISDTVVKDSVTTTVYIWNKVFQNIRGLAQGDDWSTFFKIAVFLYVLKLILSKLLTILIGIGLVFSFMAFFVYEQYESEIDGLVDNLFISLKEFMIYLMRISPVSISRLQHYEGPRKVKDLR	898

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g00515	898	Pfam	3-beta hydroxysteroid dehydrogenase/isomerase family	337	607	IPR002225	GO:0003854\|GO:0006694\|GO:0016616
	Cca04g00515	898	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	330	678	IPR036291	-
	Cca04g00515	898	SUPERFAMILY	Metallo-hydrolase/oxidoreductase	62	301	IPR036866	-
	Cca04g00515	898	TIGRFAM	GSH_gloB: hydroxyacylglutathione hydrolase	65	313	IPR017782	GO:0004416\|GO:0019243
	Cca04g00515	898	Gene3D	-	327	680	-	-
	Cca04g00515	898	Gene3D	-	62	316	IPR036866	-
	Cca04g00515	898	PANTHER	BETA LACTAMASE DOMAIN	2	313	-	-
	Cca04g00515	898	Pfam	Reticulon	705	862	IPR003388	-
	Cca04g00515	898	SMART	Lactamase_B_5a	72	231	IPR001279	-
	Cca04g00515	898	Hamap	Hydroxyacylglutathione hydrolase [gloB].	62	316	IPR017782	GO:0004416\|GO:0019243
	Cca04g00515	898	Pfam	Metallo-beta-lactamase superfamily	76	231	IPR001279	-
	Cca04g00515	898	CDD	hydroxyacylglutathione_hydrolase_MBL-fold	67	231	IPR035680	-
	Cca04g00515	898	ProSiteProfiles	Reticulon domain profile.	705	863	IPR003388	-
	Cca04g00515	898	PANTHER	HYDROXYACYLGLUTATHIONE HYDROLASE	2	313	-	-
	Cca04g00515	898	Pfam	Hydroxyacylglutathione hydrolase C-terminus	232	313	IPR032282	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g00515	Cca-Chr4	5021401	5033308	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g00515	334	683	Lipid Metabolism Gene Families	AT2G33630	30.239	2.82e-34	135

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g00515	K23558		-	gmx:100794808	950.658