Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00514 ATGGCGAGTGGTAACACTAGTCATCTCTTAAGCCTCTTGCTTTTGCTTCTAACTTTTCACTCTTCAGTTGCTGAGGTTTTCTTCGAAGAGAGATTCGAAGATGGTTGGAAGAGCCGTTGGGTGTTATCCGATTGGAAAAGGAGCGAGGGGAAAGCTGGCACCTTCAAGCACACTGCAGGGAAATGGTCTGGTGATCCTGATGACAAAGGTCTTCAGACGTATAATGACGCCAGGCATTTCGCCATATCTGCCAAGATACCGGAGTTAAGCAACAAGAACAGAACCCTGGTGCTGCAGTATTCAATTAGGTTTGAGCAGGACATTGAATGTGGTGGCGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGAAGAAGTTTGGTGGTGATACTCCTTATAGTTTGATGTTCGGACCAGATATATGTGGTTCGCAGACAAAGAAGCTCCATGTTATACTATCCTACCAGGGGCAGAATTACCCTATTAGAAAGGATCTGCAATGTGAAACTGATAAGTTGACTCATTTCTATACATTTATTCTGAGGCCTGATGCCTCTTATAGTGTCCTAGTTGATAATCGGGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAATGCAAAAAAGCCGGCAGACTGGGATGATAAAGAGTACATCGAAGATCCTAATGATGTTAAACCAGAGGGATATGATTCAATTCCAGTTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGCTTACTGGGATGATGAAGATGATGGACTATGGAAGCCCCCAAAGATTCCTAATCCAGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTTCTCAAACCAATTAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAATATCTTAATTTGTGATGATCCCCAGTATGCAAAGCAAGCTGTGGATGATTTTATGGCTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCACGGagagcaagagaagagggtgaaaaaaggaggagggagaggGATCACAAATATGGCAATAGGAGGCGTCGTCGAAGGCCGGATCCCCACGATATGGATGATTACCATGATGAACTTTGA 1257 0.4169 MASGNTSHLLSLLLLLLTFHSSVAEVFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTYNDARHFAISAKIPELSNKNRTLVLQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGSQTKKLHVILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVNAKKPADWDDKEYIEDPNDVKPEGYDSIPVEIPDPKAKKPAYWDDEDDGLWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQAVDDFMANNREAEKEAFEEAEKERRAREEEEARRAREEGEKRRRERDHKYGNRRRRRRPDPHDMDDYHDEL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00514 418 Pfam Calreticulin family 29 263 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 Pfam Calreticulin family 265 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 ProSitePatterns Calreticulin family signature 1. 103 118 IPR018124 GO:0005509
Cca04g00514 418 MobiDBLite consensus disorder prediction 359 418 - -
Cca04g00514 418 Coils Coil 356 394 - -
Cca04g00514 418 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 223 IPR013320 -
Cca04g00514 418 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 PRINTS Calreticulin signature 286 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 PRINTS Calreticulin signature 319 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 PANTHER CALRETICULIN AND CALNEXIN 9 418 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 MobiDBLite consensus disorder prediction 359 393 - -
Cca04g00514 418 PIRSF Calreticulin 5 416 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca04g00514 418 Gene3D Calreticulin/calnexin, P domain 210 311 IPR009033 GO:0005509|GO:0005515
Cca04g00514 418 Gene3D - 25 380 - -
Cca04g00514 418 SUPERFAMILY P-domain of calnexin/calreticulin 206 321 IPR009033 GO:0005509|GO:0005515
Cca04g00514 418 MobiDBLite consensus disorder prediction 225 259 - -
Cca04g00514 418 PANTHER CALRETICULIN-3 9 418 - -
Cca04g00514 418 MobiDBLite consensus disorder prediction 404 418 - -
Cca04g00514 418 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00514 Cca-Chr4 5011947 5017982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00514 8 346 Miscellaneous Gene Families AT5G61790 35.930 2.54e-66 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00514 K08057 - gmx:100802428 755.747