Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00510 ATGGGGAATCagcaagagcaagagcaagagcaagagcaGACAAccaccgccaccgccaccgccaccgccCTCGCCATGAAGCACAACCCCGGCATCTCCCTCGATTGGACTCCCCACGAACAGACTATTCTTCAACAAGGACTCTCTCTGTTTGCGTCTGAAACTAATCTCACCCGCTATGCAAAGATAGCACTAAATCTTAAAAACAAGACAGTTCGGGATGTAGCACTGAGAGTCAGGTGGATGCATAAAAAAGAAAATGGCAAGAGAAGGAAGGATGATCATAATTTTCCAAAGAAAATTAAAGATAAAAAGGAAAAGGTTTCCAGTCCTGCAGCAAGGTCATCTCACTTTACTGCTCAACCTGATGTTTCCCTGTATGCTCTTGCAATGATCATGATGGACAATGATGATGGCATCTCTCACAAAGTTATTGGAGGCCCCACAGGTGAGCTCTTAGAGCAAAATGCACAGGCCTTGAATAAAATCTCAAGCAATCTTGCTGCTCTTCAGTTTCAGGATAACATCAATCTTTTCAGCCAAACGAGAGACAACATAATCAAAATTTTGAACAACATGAATAACATGCCAGAGGTAATGGAGCAAATGCCGCCTCTTCCTTTTAAGATCAATGAAACGATATTCAACTCTATACTTCCAACAACAAATCACCAGATGCAATAA 684 0.3787 MGNQQEQEQEQEQTTTATATATALAMKHNPGISLDWTPHEQTILQQGLSLFASETNLTRYAKIALNLKNKTVRDVALRVRWMHKKENGKRRKDDHNFPKKIKDKKEKVSSPAARSSHFTAQPDVSLYALAMIMMDNDDGISHKVIGGPTGELLEQNAQALNKISSNLAALQFQDNINLFSQTRDNIIKILNNMNNMPEVMEQMPPLPFKINETIFNSILPTTNHQMQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00510 227 Pfam Protein of unknown function (DUF3755) 170 202 IPR022228 -
Cca04g00510 227 PANTHER FINGER CCCH DOMAIN PROTEIN, PUTATIVE (DUF3755)-RELATED 17 218 - -
Cca04g00510 227 MobiDBLite consensus disorder prediction 83 111 - -
Cca04g00510 227 MobiDBLite consensus disorder prediction 83 116 - -
Cca04g00510 227 Gene3D - 32 89 - -
Cca04g00510 227 PANTHER HISTONE H2A DEUBIQUITINASE (DUF3755) 17 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00510 Cca-Chr4 4974253 4979067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00510 - - ccaj:109800949 413.69