Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00505 ATGGCCGTCAACGACGCCGATCAGTCCAACAGGGCTCACAGGAGTCGCCAATCCGGCGCCAAACACGATaagaagaagtccaagaagaagcagaagcagaagcagaagTCCGATGGCGGAGAAGAGGATCCGAAAAGGCAAAACCCTAGGGCATTCGCCTTTTCTTCCTCTAACAAGGCCAAGCGCCTGCAATCGCGCGCCGTCGAGAAAGAGCAGCGCCGCCTCCACGTTCCTATAATCGACCGCTCATACGGCGAGCCCGCTCCATTCGTCGTCGTCGTGCAGGGTCCTCCTCAGGTTGGGAAGTCACTGTTGATCAAGTCTTTGGTTAAGCATTACACGAAGCAAAATTTGCCTGATGTTCGAGGTCCAATTACTATCGTGTCAGGGAAGCAAAGGCGGCTGCAGTTTGTGGAATGTCCGAATGATATCAATGGCATGATAGATGCGGCGAAGTTCGCAGATCTAGCGCTTCTTCTTATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAGTTCCTTAATATATTGCAAGTTCATGGATTCCCAAAGGTCATGGGTGTTCTCACTCATCTTGACAAATTCAAGGATGCAAAAAAGTTGAGGAAAACAAAACAACGACTCAAACACCGATTTTGGACTGAAATATATGACGGTGCTAAACTATTCTACTTATCTGGTCTTATTCATGGAAAGTATGTCAAGCGTGAAGTGCACAATCTTGCTCGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGGACTTCCCACCCCTATGTTTTGGTAGATCGTTTTGAAGACATCACTCCTCCTGAAAAAGTGCATGCAAATAATAAATGCGACAGGAAAGTCACCCTTTACGGTTATCTTAGAGGATGTAATTTGAAAAAGGGCAATAAGGTGCACATAGCTGGAGTGGGTGATTATAGTTTAGCTGGTGTTACTGCTTTGCCTGATCCTTGTCCTCTCCCATCTGCCGCAAAAAAGAAAGGACTTCGTGACAAGGAAAAATTATTCTATGCTCCCATGTCTGGCCTCGGGGATCTCTTGTATGACAAAGATGCTGTTTACATAAATATTAATGACCACCTTGTTCAATTCTCAAAAGTTGATAATGAAAACTCTGCTATGACAAGTAAAGGAAAGGACAGAGATATAGGGGAGGTTTTGGTGAAATCACTACAAAATACCAAATACTCAATCAATGAAAAACTAGAGAACAGCTTTATCAATCTTTTTGGTCAAAAGCCAAAAGTGTCATCAGAAGCTTTAGCTGATGCAGATGGCACAGACAAGGATGTAGAACAGAATGTCAAAACAGTGGGTTTGGATAAAGAATCATCTGATCAGGATGATGACTCCATGACAGACAGCGAAGCCTCTAGTTCTGATGACAAAGATGATGATGCACCAAATAGTAATGCTGTGAACAGAGACCACCTGCAAGAACATATTGAGTTTCATGATGGAAGACAAAGGCGAAGAGCAGTATTTGGAAATGATGTTGATCAAAGTGATCTGATGGATTCAGAAGGAGATGAGGATGCTGCTGCCAGTGATGATGTAGAATCTTCTGATTCAGAATCTTCAGAAGATGATGAGGAAGATGACAACAATAATGATGACTCAAATGAAGATGACGCGAGCAATACTTCCAAGTGGAAAGAGTCTTTGGCAGAAAGAACACTCTCACGGAAGACTCCTAGTTTGATGCAACTTGTGTATGGTGAATCTACTATTAGTTCAACCACTATAAACAGAGAGAAAGATAATAGTGGGGATGAGGAAAGTGATGATGACTTCTTTAAACCCATAGAAGAAGTGAAAAAGCAAAACATGAGAGATGGATTTAATGATGATGGAATGGTCAACACTGAAGATTGTTCCAAGTGTACACAATTTATGGATCAGAGATGGGATGAGAAAGATAATGAGGAGATTCGCAACCGGTTTGTGTCTGGCAATTTGGCAAAAGCAGCACTCAGAAAAGCATTACCAAGAGCTAATGCTGAAGAGGAAAATGATGATGTCTATGGTGTCTTTGAAGACTTGGAAACAGGAGAAAAACATGAGAATGATCAGACAGATGATGCTTTTGCAGCAACAACACACAAGGGAAATGATTTGGAAGCGGAGGAAAGGAGGCTTAAGAAACTTGCTCTTCGTGCTAAATTTGATTCTCAATTTGATGATGACTCTGGATCACCAGAGGAGGATGCTGGTAATGAAAATGAAGGCAAGCTACGTCATGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAAGAGGAGATTGAACTCCAGAAACAAATAAATATAGCTGAACTCAATGATCTTGATGAGGCTACCCGATTGGAGATAGAAGGCTTCCGAACAGGGACATATCTAAGATTGGAGGTTCATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAGTATTGGTTGGAGGCGTTGGCATAGGGGAGGAAAATGTTGGATACATGCAGACCAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGATCCAATTATTGTATCTGTTGGATGGAGGCGTTACCAAACAACCCCAGTTTATGCCATTGAGGATAGCAATGGAAGGCATCGCATGCTAAAATACACCCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCTGTTCAGAATTTATCAAACAATCATGCTACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCAGCAAGGATTGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCAATTATCAAGGATATGTTTACTTCAGACCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGGACTGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGTAAAAGAAGAGCTGGGTAATCAACCAAAAAGGAAGGGGGGGCAAACCAAAGAAGGAATTGCTAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGGGCATGGACTCAAGTGGAAGTTCCTCAGTTTTATAATCCATTGACAACAGCATTGCAGCCTCGTGACAAGACCTGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGAACACAATCTTCCTATACCTGTAAACAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGGAAGTTCAATCCATTGGTGATTCCCAAATCTCTACAAGCAAGTCTTCCCTTTGCATCAAAACCTAAGGATGTACCCAAGCGAAAAAAACCCTTACTCGAAGAGAGAAGGGGAAGGGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATGCTCTTGTTCAACACCTCCAGTTAATAAATAATGAGAAGATGAAAAAGAGAAAGCTGAAGGAAGAGAATAAGAGGAAAGTGCTTGAAGCAGAGAGAGCAAAAGAGGAGCAGTTGTCGAAAAAGCGTCGGAGAGAGGAAAGACGAGATAAATACCGAGCGCAAGACAAACAGAATAAGAAAATGCGGAGAGCAGAGGTTTGA 3603 0.4185 MAVNDADQSNRAHRSRQSGAKHDKKKSKKKQKQKQKSDGGEEDPKRQNPRAFAFSSSNKAKRLQSRAVEKEQRRLHVPIIDRSYGEPAPFVVVVQGPPQVGKSLLIKSLVKHYTKQNLPDVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLAGVTALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDNENSAMTSKGKDRDIGEVLVKSLQNTKYSINEKLENSFINLFGQKPKVSSEALADADGTDKDVEQNVKTVGLDKESSDQDDDSMTDSEASSSDDKDDDAPNSNAVNRDHLQEHIEFHDGRQRRRAVFGNDVDQSDLMDSEGDEDAAASDDVESSDSESSEDDEEDDNNNDDSNEDDASNTSKWKESLAERTLSRKTPSLMQLVYGESTISSTTINREKDNSGDEESDDDFFKPIEEVKKQNMRDGFNDDGMVNTEDCSKCTQFMDQRWDEKDNEEIRNRFVSGNLAKAALRKALPRANAEEENDDVYGVFEDLETGEKHENDQTDDAFAATTHKGNDLEAEERRLKKLALRAKFDSQFDDDSGSPEEDAGNENEGKLRHGQANESSYFDKLKEEIELQKQINIAELNDLDEATRLEIEGFRTGTYLRLEVHDVPCEMVEYFDPYHPVLVGGVGIGEENVGYMQTRLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAVQNLSNNHATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTAIIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAVKEELGNQPKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDKTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDVPKRKKPLLEERRGRGVVMEPRERKVHALVQHLQLINNEKMKKRKLKEENKRKVLEAERAKEEQLSKKRRREERRDKYRAQDKQNKKMRRAEV 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00505 1200 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 88 252 IPR030387 -
Cca04g00505 1200 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 710 1032 IPR007034 -
Cca04g00505 1200 Pfam AARP2CN (NUC121) domain 238 323 IPR012948 GO:0005634|GO:0042254
Cca04g00505 1200 PANTHER BNAC08G44910D PROTEIN 5 1191 - -
Cca04g00505 1200 PANTHER RIBOSOME BIOGENESIS PROTEIN 5 1191 IPR039761 GO:0042254
Cca04g00505 1200 Coils Coil 1136 1182 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 462 503 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 1 70 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 509 547 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 1148 1200 - -
Cca04g00505 1200 SMART aarp2cn2 238 324 IPR012948 GO:0005634|GO:0042254
Cca04g00505 1200 MobiDBLite consensus disorder prediction 566 590 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 427 605 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 549 565 - -
Cca04g00505 1200 Gene3D - 90 252 IPR027417 -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 428 452 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 691 710 - -
Cca04g00505 1200 CDD BMS1 51 280 IPR037875 GO:0005525
Cca04g00505 1200 MobiDBLite consensus disorder prediction 17 33 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 34 48 - -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 591 605 - -
Cca04g00505 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 226 IPR027417 -
Cca04g00505 1200 MobiDBLite consensus disorder prediction 730 756 - -
Cca04g00505 1200 SMART DUF663_2 703 1031 IPR007034 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00505 K14569 - gmx:100810906 2037.69