Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00499 ATGTTTCCAACATCTTCACTCTCACTCTCACTCTCTTGCAATCCCAAAACGCCAAAATTGTTTTCGCCATTCCATTTTTTGGGTTTCGCCAACGATTCCAGTTTCAGGCTTCATTGCTCTCAGGAAAGAAGCCTAGCACCACCGGCAGTTGGATTAGATGAAAGCATTGGGAGAATATTAATCACAAAAGACCATGTTTTGAGTGACAATGCTCCATTGCTTCAGCAAAATGGCCTACCTCCTCTAGTCAGTGCACTGAAAGCCTCGGCTGAACAAAACGCTGCCAGTTTTCACTTTCCTGGACATAACAGAGGGCGTGCCGCACCTGCTTCGTTGACTCGGCTCATTGGAAGAAGACCATATGTTCATGACTTGCCTGAGCTTCCAGAGCTTGACAATCTCTTTTGTCCTCAGGGTCCCATATTAGAAGCACAAACTGAAGCAGCCAAACTGTTTGGATCATCACAGACATGGTTTCTTGTTGGAGGTACTACTTGTGGGATACAGGCAGCGATAATGGCAACTTGTTCTCCCGGAGAATTTCTGATTCTTCCAAGGAATTCTCATATATCAGCTATTTCTGCTTTGGTGTTGTCTGGTGCAGTGCCCAAGTACATCATTCCTGACTATGAGAATGATTGGGATTTTGCTGGTGGTGTCACTCAATTACAGGTATTGAAAGCCATCCAGGAATTAGAAATGGAAGGCAAAAAGACAGCAGCAGTCTTCATCACTTCTCCTACTTATCATGGTATTTGCAGTAACTTGAGCGAGATTTCTGAGCTGTGTCATTCTTGTAAAATTCCTTTGATTGTTGATGAAGCTCATGGCGCACATTTTGGATTTCATTCTGAACTGCCTAACTCAGCCCTACATCAAGGGGCTGATCTGACTGTCCAGTCTACTCACAAAGTTCTATGTTCTCTTACTCAGTCATCTATGCTGCACATGTCTGGTAATATTGTAGATAAGGAAAAAATCTCTAGATGTCTCCAAACTCTTCAAACCACAAGCCCTAGTTATTTGCTTTTGGCATCCCTGGATGCTGCTAGAGCTCAACTTAGTGAAAGCACTGATGTTGTATTCAGTCAAGCAATTGCGTTAGCCTGTGAAGCAAAGTGCACACTAAGACAAATCCCTGGTATATCAGTGCTTGAGAATTCAAGCTTTCCCACCTTTCCTGCAATTGACCCATTGCGCCTCACTGTAGGTTTTTGGAAGCTTGGTTTATCAGGTTATGAAGCAGATGAAATCTTGTACAGAGATTATGGAGTCGTCTGTGAACTTGTTGGGAATAAATCTATTACTTATGCATTTAATCTTGGAACTTCTAGGGTCCATGTCCAAAGGCTTTTATTGGGAATAAAGCATTTGGCTGCAACATATGCTTCCATTCAGCATCCTGAAGAGAGAGTGCTTAGTGTTCATGCACCCTATGATGATATAATCATGAGTTTAATCCCTAGAGATGCCTTTTTTGCAAGTAAAAAGAAAGTAACGATAAAGGAGAGCGTTGGTGAGGTGTCGGGGGAGCTTATATGTCCATACCCTCCGGGTATACCAGTATTGATCCCTGGCGAGGTTATTACCAAAAAAGCTGTTGATTATCTTCTTCATGTTAGGAGTAAAGGTGCTGATATTAGTGGAGCATCTGATCCTTTACTTTCTTCAATTATTGTTTGCAACGTATAG 1692 0.4238 MFPTSSLSLSLSCNPKTPKLFSPFHFLGFANDSSFRLHCSQERSLAPPAVGLDESIGRILITKDHVLSDNAPLLQQNGLPPLVSALKASAEQNAASFHFPGHNRGRAAPASLTRLIGRRPYVHDLPELPELDNLFCPQGPILEAQTEAAKLFGSSQTWFLVGGTTCGIQAAIMATCSPGEFLILPRNSHISAISALVLSGAVPKYIIPDYENDWDFAGGVTQLQVLKAIQELEMEGKKTAAVFITSPTYHGICSNLSEISELCHSCKIPLIVDEAHGAHFGFHSELPNSALHQGADLTVQSTHKVLCSLTQSSMLHMSGNIVDKEKISRCLQTLQTTSPSYLLLASLDAARAQLSESTDVVFSQAIALACEAKCTLRQIPGISVLENSSFPTFPAIDPLRLTVGFWKLGLSGYEADEILYRDYGVVCELVGNKSITYAFNLGTSRVHVQRLLLGIKHLAATYASIQHPEERVLSVHAPYDDIIMSLIPRDAFFASKKKVTIKESVGEVSGELICPYPPGIPVLIPGEVITKKAVDYLLHVRSKGADISGASDPLLSSIIVCNV 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00499 563 SUPERFAMILY Ornithine decarboxylase C-terminal domain 418 561 IPR036633 GO:0003824
Cca04g00499 563 Gene3D - 80 360 IPR015421 GO:0003824
Cca04g00499 563 PANTHER ARGININE DECARBOXYLASE 62 562 - -
Cca04g00499 563 CDD Orn_deC_like 81 373 IPR000310 GO:0003824
Cca04g00499 563 Pfam Orn/Lys/Arg decarboxylase, major domain 80 378 IPR000310 GO:0003824
Cca04g00499 563 Gene3D - 462 558 - -
Cca04g00499 563 SUPERFAMILY PLP-dependent transferases 80 458 IPR015424 -
Cca04g00499 563 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 496 543 IPR008286 GO:0003824
Cca04g00499 563 PANTHER ARGININE DECARBOXYLASE 62 562 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00499 - - gmx:100819143 980.704