Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00485 ATGACAAACACAAACCGTGCTACAATGTTAGTAGAGCAAAATACAAACACCTTACACAGACCCAAATTCGGAGCCTTGTTGCACTCCGATGCCACGTCGCTTCACACCTCCAACGACGACGAAGACTTCACCCACAACCGCCACAGCAATGCCAGCCCTACAAACTACGCCGACAGCAGCACCAATGCCTCTCCCTACGCCATGTCTCCATGGACCAACCAACCTTCTTCCTCTCCTCTCAACAACTCTCCATGGCTATTACCCTCATCACCCGCCTTCAACCTCTTCAACAACAACAACTACTTCCTCCAAAACGGTCTCATCGGATCCCTCGTCCGCGAAGAGGGTCACATATACTCCTTGGCGGTTTCCGCTGACTTGTTATACACCGGTTCCGATAGCAAGAACATAAGGGTGTGGAAGGATCTCAAGGACTTCGCCGGCTTCAAATCCAGCAGTGGATTGGTCAAAACCATAGTTATCTCCGGCGGGAGAATCTTCACCGGCCACCAAGACGGCAAGATCAGAGTGTGGAAGGTTTCCACCAAGAATCCCAAAAAACATAAACGCGTGGGGAGCTTGCCCACGTTCAAAGAGTACGTGAAGAGTTCCATGAACCCGAAGAACTACGTGGAGGTTCGAAGGAACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGCCTGAGTTTAGATGAGGAGGAGGGGTTGTTGTACTCGGGTTCGTGGGACAAGACGCTGAAAGTGTGGCGCGTGGCGAATTCCAAGTGCTTGGAATCGATTCACGCGCACGAAGACGCTGTGAACGCGGTGGTGGCGGCGTTCAAGGGTATCGTGTTGACGGGTTCCGCGGACGGGACGGTGAAGATGTGGAGGAGGCAAATCGAGAATGGCGAGAAGCCGAAGCACGTGTTCGAGCGTGTTCTGTTGAAGCAAGAGAACGCCGTGACGGCGCTGGCGGTGAACCGTTCGGCGGCGGTGGTATACTGCGGTTCCTCCGACGGGTTGTTGAACTTCTGGGAGCTCGACCACAAGGGAGGGCTATCGCACGGCGGCGTTCTGAGGGGGCACAAGCTGGCCGTGCTCTGCCTCGCCGCAGCGGGGAACCTCGTCTTCAGCGGCTCCGCCGATAAGAACGTTTGCGTGTGGAAGCGCGACAAGAGCGGGTTCCACACGTGCCACATGGTTCTCACGGGTCACACGGGTCCCGTGAAGTGCATCGCCGTGGAGGAAGAACAAGCGCCACGCGAGAATGGGGACCAGGGCTGGATTGTGTACACCGGAAGCTTGGACAAGTCGGTGAAGGTGTGGCGCGTGTCTGAACATGCGCCCGAGATGAGCGTGTTCCAGAACTTTGCCACACCCGCTCATGCTGGGATGAGTGGTTCCTCCCCGTGGAAAAAAAGTGCTACCAATGAAAACGGCCAAAACATCCACAACGCTGCTAACCATGGCCGCGCTGATTTCTATTAG 1479 0.5565 MTNTNRATMLVEQNTNTLHRPKFGALLHSDATSLHTSNDDEDFTHNRHSNASPTNYADSSTNASPYAMSPWTNQPSSSPLNNSPWLLPSSPAFNLFNNNNYFLQNGLIGSLVREEGHIYSLAVSADLLYTGSDSKNIRVWKDLKDFAGFKSSSGLVKTIVISGGRIFTGHQDGKIRVWKVSTKNPKKHKRVGSLPTFKEYVKSSMNPKNYVEVRRNRNAVKVKHFDAVSSLSLDEEEGLLYSGSWDKTLKVWRVANSKCLESIHAHEDAVNAVVAAFKGIVLTGSADGTVKMWRRQIENGEKPKHVFERVLLKQENAVTALAVNRSAAVVYCGSSDGLLNFWELDHKGGLSHGGVLRGHKLAVLCLAAAGNLVFSGSADKNVCVWKRDKSGFHTCHMVLTGHTGPVKCIAVEEEQAPRENGDQGWIVYTGSLDKSVKVWRVSEHAPEMSVFQNFATPAHAGMSGSSPWKKSATNENGQNIHNAANHGRADFY 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00485 492 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 10 455 - -
Cca04g00485 492 Pfam WD domain, G-beta repeat 395 439 IPR001680 GO:0005515
Cca04g00485 492 Pfam WD domain, G-beta repeat 354 386 IPR001680 GO:0005515
Cca04g00485 492 Pfam WD domain, G-beta repeat 115 141 IPR001680 GO:0005515
Cca04g00485 492 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Cca04g00485 492 Pfam WD domain, G-beta repeat 224 252 IPR001680 GO:0005515
Cca04g00485 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 345 IPR001680 GO:0005515
Cca04g00485 492 MobiDBLite consensus disorder prediction 462 483 - -
Cca04g00485 492 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 455 IPR045182 -
Cca04g00485 492 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 258 - -
Cca04g00485 492 MobiDBLite consensus disorder prediction 48 82 - -
Cca04g00485 492 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Cca04g00485 492 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Cca04g00485 492 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Cca04g00485 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 293 IPR001680 GO:0005515
Cca04g00485 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Cca04g00485 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 449 IPR001680 GO:0005515
Cca04g00485 492 MobiDBLite consensus disorder prediction 37 82 - -
Cca04g00485 492 Gene3D - 98 211 IPR015943 GO:0005515
Cca04g00485 492 Gene3D - 212 463 IPR015943 GO:0005515
Cca04g00485 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 386 IPR001680 GO:0005515
Cca04g00485 492 SMART WD40_4 142 179 IPR001680 GO:0005515
Cca04g00485 492 SMART WD40_4 392 440 IPR001680 GO:0005515
Cca04g00485 492 SMART WD40_4 256 294 IPR001680 GO:0005515
Cca04g00485 492 SMART WD40_4 349 386 IPR001680 GO:0005515
Cca04g00485 492 SMART WD40_4 304 343 IPR001680 GO:0005515
Cca04g00485 492 SMART WD40_4 104 141 IPR001680 GO:0005515
Cca04g00485 492 SMART WD40_4 218 253 IPR001680 GO:0005515
Cca04g00485 492 MobiDBLite consensus disorder prediction 462 492 - -
Cca04g00485 492 CDD WD40 115 440 - -
Cca04g00485 492 SUPERFAMILY WD40 repeat-like 109 451 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00485 Cca-Chr4 4784772 4787679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00485 166 445 Acyl Lipid Metabolism Gene Families AT3G18860 27.243 2.03e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00485 - - gmx:100807706 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00485 04 4784772 4787679 Cca04g00485 04 4784772 4787679 ECH