Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00482 ATGAAAATGTGGAAGAGAATGGATTTTCAAGAAGAAGCAATTCAATTGATCAACTCTGATTTCAGAGACCTGAGTCTCGCTGCTAATAGACTCGCTCATCATGCCATCAAACTTGGTGGCATGGGCTTTGGAGCCTCTTTTTTCGGTTTCATCGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAATTGGAAGACAAATATTCTCACGGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAGTTTTTGGCGTCTTCAGGGGAGAGATTGGAAAATGGATTGCTTTAATTGCTGTTGTATTACGCCTTTTCCTTCCTAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTTTGATTCTTCTTATCGTTGTAGCTCCTAGTCTAATTGCAAGCACCTTCAGAGACAACATTGTTGGGGTGGTAGTGTGTCTCATCATTGCATGCTATCTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCATTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTCTATCCCATCTGGGCGCTGGTGGTCATCCTTTTTTAG 603 0.4245 MKMWKRMDFQEEAIQLINSDFRDLSLAANRLAHHAIKLGGMGFGASFFGFIAAIAAIYLLILDRTNWKTNILTALLIPYIFFSLPSLVFGVFRGEIGKWIALIAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00482 200 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 2 199 - -
Cca04g00482 200 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 2 199 IPR008892 GO:0016021
Cca04g00482 200 Pfam Cold acclimation protein WCOR413 10 187 IPR008892 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00482 Cca-Chr4 4738123 4740441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00482 - - gmx:100811430 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00482 04 4738123 4740441 Cca04g00482 04 4738123 4740441 ECH