Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00481 ATGGCAGGGGTTTACACTGTGAAGGTGGAGGAAGCAAGGCCAGCAACTCCTGAAAAGCCATCAGCAGGCCCTGCCTACAGATGCATTTTTGCCAAAGATGCTTTGACAAACTTGCCTTCTCTTTTTGAATCTCCATGGGACTTCTTCAGGGACACGAAAACGAGGTGCCCCAGCAACCCGATGCTGGGTCGCCGTAAAAAAACCGGTTCCAAGGTGGATCCCTATGAATGGATCACATATCAGGAGGCTTATGATGCTGCCATCCAAATTGGTTCCGCCATGAAGAGCCGTGGTGTCAATCCTGGAGACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATCATTGCAATGGAGGCTTGCAATGGCTATGCAGTAACATATGTCCCATTATACGACACCTTGGGTCCAAATGCTGTGGAGTTTATCATAAACCATGCTGAAGTTTCGATAGCATTTGTACAGGATAACAAGATTCCTTCTGTTTTGTCATGCCTTGATAGGTGTTCAAATCTTAAAACTATTGTGAGTTTTGGTAATGTTTCATCTTCACAAAAGAAGGAAGCTGAGGAGCTTGGTGCATCTTGCTTCACGTGGGGAGAGTTTCTCCAGTTGGGAAATACGGATTTTGACGTACCACTGAAAAAGAAGACTAACATCTGCACAATCATGTACACTAGTGGAACAACAGGCGAACCCAAAGGCGTTATTATCAAGAATGAGGCTTTCATGACCCAAGTGTTGTCTATTGACCAAATACTTTATATAACTGACGTAGTGGGAACAGAAGACGATGTCTACTTTTCTTTCCTTCCTCTTGCTCATATATATGACCAGATAATGGAGACATATTGCATCTACAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATGTCAGGTTCTTAATGGAAGATATTCAGGCGCTGAAACCAACTTTATTTTGTGGCGTTCCTAGAGTATATGATCGTGTTTATGCTGGTATCAGTAGCCAAATTTCATCTGGAGGAGCACTGCGAAGTACATTGTTTCAATATGCATATAACTACAAATTGGGATATCTGGAAAAGGGTCTTCCCCAAGACAAAGCAGCACCCTTGTTTGATAGGCTCGTGTTTGATAAGATAAGACAAGCATTAGGTGGACGAGTTCGTCTTCTATTATCAGGAGCTGCTCCTTTGCCTAGGCAAGTGGAGGAGTTTTTGAGGGTCACTTTTGGAGCTAATATGTCACAAGGATATGGTCTTACTGAAAGTTGTGGTGGGTGTTTCACTGCAATAAGCAATGTGTTTTCTATGATGGGAACAATTGGAGTCCCTATGACAACCATTGAGGCCAGGCTTGAATCTGTGCCAGAGATGGGATATGATGCACTCTCCAGTGAAGCCCGTGGAGAAATTTGCCTGAGAGGAAATACCTTGTTCTCTGGTTATCACAAGCGTCAAGATCTTACCGAAGAGGTTCTGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCAAATGGATCCATGAAAATTATCGATAGAAAAAAGAACATCTTTAAATTGTCTCAAGGAGAATATGTTGCCGTAGAGAATATTGAAAACAAGTATTTGCAGTGCCCCCTTGTAACATCGATTTGGGTCTATGGAAACAGTTTTGAGCCTTTTTTGGTGGCAGTAGTGGTCCCTGAAAGAAATGCCCTTGAGGATTGGGCAATGAAGCATAATTCTAATGTTGATTTCAAATCTTTATGTGGAAATCTTAAGGCAAGAAAATACATTTTGGATGAGCTCAACAGAACTGGTCAGAAACACCAACTTAGAGGTTTTGAGATGCTAAAAGCAGTTCATCTGGAACCAATTCCCTTTGACATGGAGAGAGATCTGGTAACTCCAACATTCAAGCTGAAGAGATCACAATTGCTCAAGCACTATAAGGATTATATTGATCAACTGTACAAGGAAGCGAAGGCACAGAAGGTGTGA 1980 0.4278 MAGVYTVKVEEARPATPEKPSAGPAYRCIFAKDALTNLPSLFESPWDFFRDTKTRCPSNPMLGRRKKTGSKVDPYEWITYQEAYDAAIQIGSAMKSRGVNPGDRCGIYGSNCPEWIIAMEACNGYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDNKIPSVLSCLDRCSNLKTIVSFGNVSSSQKKEAEELGASCFTWGEFLQLGNTDFDVPLKKKTNICTIMYTSGTTGEPKGVIIKNEAFMTQVLSIDQILYITDVVGTEDDVYFSFLPLAHIYDQIMETYCIYKGSSIGFWQGDVRFLMEDIQALKPTLFCGVPRVYDRVYAGISSQISSGGALRSTLFQYAYNYKLGYLEKGLPQDKAAPLFDRLVFDKIRQALGGRVRLLLSGAAPLPRQVEEFLRVTFGANMSQGYGLTESCGGCFTAISNVFSMMGTIGVPMTTIEARLESVPEMGYDALSSEARGEICLRGNTLFSGYHKRQDLTEEVLVDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENKYLQCPLVTSIWVYGNSFEPFLVAVVVPERNALEDWAMKHNSNVDFKSLCGNLKARKYILDELNRTGQKHQLRGFEMLKAVHLEPIPFDMERDLVTPTFKLKRSQLLKHYKDYIDQLYKEAKAQKV 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00481 659 CDD LC-FACS_euk 74 652 IPR045311 GO:0004467|GO:0006631
Cca04g00481 659 Pfam AMP-binding enzyme 73 521 IPR000873 -
Cca04g00481 659 SUPERFAMILY Acetyl-CoA synthetase-like 38 653 - -
Cca04g00481 659 Gene3D - 35 513 IPR042099 -
Cca04g00481 659 PANTHER LONG-CHAIN FATTY ACYL COA LIGASE 3 655 - -
Cca04g00481 659 Pfam AMP-binding enzyme C-terminal domain 531 572 IPR025110 -
Cca04g00481 659 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 3 655 - -
Cca04g00481 659 ProSitePatterns Putative AMP-binding domain signature. 224 235 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00481 Cca-Chr4 4730659 4737758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00481 5 657 Acyl Lipid Metabolism Gene Families AT4G23850 54.962 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00481 K01897 - gmx:100790068 1219.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00481 04 4730659 4737758 Cca04g00481 04 4730659 4737758 ECH