Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00479 ATGGATGAAGTACCTGGATCCGTGGGCACCAGTGCCAGCTTCAGTCTCAGATTGGGCCAGACCATGttctcttctgcttcccttctctttatgtctctCGGGGTTGAATTCTACAGCTTCACGGCTTTCTGCTATTTGGTGACAATTATGGGGTTGGTCATACCATGGAGTTTCACATTAGCATTGGTAGATGGATATTCTGTTCTAGTCAAATGCCCCATTCGTCAACCAGGAATACTTTTGATTATTGTTGTGGGAGATTGGGTGTTATCAACCCTCACACTAGCAGCAGCTTGCTCAACAGCCAGTGTTGTGGATCTCCTGCTCAACACACATGGGTCTTTTTGCCCGCAAAAGCTTTGTGGCAGATACAGGATATCTGCAATTATGGCCTTTATGTCATGGTTTTTATCTTTGGCATCCTCTCTATTCAACCTTTGGCTATTACCCTCTTTGTGA 459 0.4227 MDEVPGSVGTSASFSLRLGQTMFSSASLLFMSLGVEFYSFTAFCYLVTIMGLVIPWSFTLALVDGYSVLVKCPIRQPGILLIIVVGDWVLSTLTLAAACSTASVVDLLLNTHGSFCPQKLCGRYRISAIMAFMSWFLSLASSLFNLWLLPSL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00479 152 Pfam Casparian strip membrane protein domain 9 137 IPR006702 -
Cca04g00479 152 PANTHER CASP-LIKE PROTEIN 5C3 1 151 - -
Cca04g00479 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00479 Cca-Chr4 4707431 4709790 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00479 - - gmx:100810360 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00479 04 4707431 4709790 Cca04g00479 04 4707431 4709790 ECH