Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00478 ATGGCGATTCGAAACCTTAAACAGTTTTCCCAAACTCAGAGACCCAAACCTTGGCCTCTGTTCTTTTCATCTTCTTCAAATGATGCTTCCGAGAGTTTAGTAACAGACGTTGTTTCTATCCTCACCCATCACCGTTCCAAGTCTCGTTGGAGCAATCTCCGTTTGGCGTGCCCCAATGGCATCGATCCCGTGGAATTTTCCCAAATTACCCTCCACCTCAAGAACAAACCCCAACTCGCTCTTCGCTTTTTTCTCTGGACAAAAACCAAATCTTTATGCCACCACACCCTCGCTTCTTACTCCTCCATCATCCACCTCCTCGCACGTGCGCGACTCTCCTCACATGCTTACGACCTCATCCGAACCGCCATTCGCGCTTCCGAACTAAACGACGACCAAAATCACCGTTTCGACTCGCTTCCTTTGAACCTCTTCGAAACCCTCGTCAAGACCTATCGAGATTCTGGGTCAGCTCCGTTGGTCTTCGATTTGTTGATCAAGGCGTGTTTGGATTCCAAAAAGATCGACCCTTCCATTGAGATCGTTAGAATGTTGCTCTCTCGCGGGATTAGCCCTAAATTTAGCACCTTGAACTCTTTGATTTCTAGGGTTTGTAGAAGTCGAGGGGTGGATGAAGGGTATGCTATTTACCGCGAGTTCTTTCGTTTGGATGAAGAAAAGAATGAAATTTCTAAAAGGGGTTTTGGTTTTAGAGTCACCCCCAATGTTCATACTTATAATGAATTGATGCTGTGTTGTTACCAGGAGGGTTTGGTGGATAGGATGGAGGAAATTTGGCGTGAAATGAGATGTAAACCCAATGCTTATAGCTATAGTGTATTGATGGCTGGTTTTTGTGAACAAGGGAGGATGGGGGATGCAGAAAAGTTGTGGGAAGAGATGAGAAATGAGGAAATGGAGCCTGATGTTGTTAGTTATAATACTATTATTGGTGGGTTTTGCAAAATTGGAGATGTTGGAAGGGCAGAAGAGTTTTTCAGGGAAATGGCATTGGCTGGTGTTGGCACCACTGCTTCAACTTATGAGCATCTTGTGAAGGGGTATTGCAATGTTGGGGATGTTGATTCGGCTGTTCTTGTTTACAAGGATATGTCTAGAAGGGATTTGAGGCCTGATGCTTCAACCCTTGACGTGATGCTTAGGTTGCTTTGTGATAAGGGTAGGGTTCAGGAAGCTCTGGAGTTTGTGACGTGTGCTGTTGGTAAATTTGAGTTAATTCCAAGGGAAGAGAGTTATGAGGCCTTGATAAAGGGGTTGTGTTTTGAGGGGAGGATGGAAGAAGCGTTGAAGGTTCAGGCAGAGATGGTAGGAAAAGGGTTTCAACCGAATTCTGAAATATATGGCGCTTTTATTGATGGATATATTAGACAAGGGAAAGAGGAAATGGCAGGAGAGTTTTGA 1422 0.4473 MAIRNLKQFSQTQRPKPWPLFFSSSSNDASESLVTDVVSILTHHRSKSRWSNLRLACPNGIDPVEFSQITLHLKNKPQLALRFFLWTKTKSLCHHTLASYSSIIHLLARARLSSHAYDLIRTAIRASELNDDQNHRFDSLPLNLFETLVKTYRDSGSAPLVFDLLIKACLDSKKIDPSIEIVRMLLSRGISPKFSTLNSLISRVCRSRGVDEGYAIYREFFRLDEEKNEISKRGFGFRVTPNVHTYNELMLCCYQEGLVDRMEEIWREMRCKPNAYSYSVLMAGFCEQGRMGDAEKLWEEMRNEEMEPDVVSYNTIIGGFCKIGDVGRAEEFFREMALAGVGTTASTYEHLVKGYCNVGDVDSAVLVYKDMSRRDLRPDASTLDVMLRLLCDKGRVQEALEFVTCAVGKFELIPREESYEALIKGLCFEGRMEEALKVQAEMVGKGFQPNSEIYGAFIDGYIRQGKEEMAGEF 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00478 473 Pfam PPR repeat family 418 461 IPR002885 -
Cca04g00478 473 Pfam PPR repeat family 346 391 IPR002885 -
Cca04g00478 473 Gene3D Tetratricopeptide repeat domain 406 473 IPR011990 GO:0005515
Cca04g00478 473 Gene3D Tetratricopeptide repeat domain 269 338 IPR011990 GO:0005515
Cca04g00478 473 Gene3D Tetratricopeptide repeat domain 339 405 IPR011990 GO:0005515
Cca04g00478 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 272 IPR002885 -
Cca04g00478 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Cca04g00478 473 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 6 471 - -
Cca04g00478 473 Gene3D Tetratricopeptide repeat domain 74 268 IPR011990 GO:0005515
Cca04g00478 473 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Cca04g00478 473 TIGRFAM PPR: pentatricopeptide repeat domain 311 340 IPR002885 -
Cca04g00478 473 TIGRFAM PPR: pentatricopeptide repeat domain 418 450 IPR002885 -
Cca04g00478 473 TIGRFAM PPR: pentatricopeptide repeat domain 244 273 IPR002885 -
Cca04g00478 473 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Cca04g00478 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Cca04g00478 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Cca04g00478 473 Pfam PPR repeat 271 302 IPR002885 -
Cca04g00478 473 Pfam PPR repeat 306 336 IPR002885 -
Cca04g00478 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Cca04g00478 473 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 471 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00478 9 473 Glycosyltransferase AT1G05670 25.106 1.58e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00478 - - gmx:100809831 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00478 04 4704749 4707041 Cca04g00478 04 4704749 4707041 ECH