Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00477 ATGAAATACAGTGAGATATCCCACTTCAGCCACCCGCAACACAAGCTCCGATTCGAGTACTCGGAAATCCCGTTCAAATGCGACGGGTGCAAGGAAGCGGGCATAGGGTCACGGTACAAGTGCTCGAGGTGCGACTTCGACCTTCACATGCAGTGCGGCATGGTAACCTCCCCCACCCTCTTCCACCCCTTCTACGGGAAGTGCACCTTCCACTTCATGTCGTCGCCACCAGGGGACACACCTCGCTACTGCAACGCCTGCGAGAAGGACGTGACGGGGTTCGTGTACCACTGCAAAGCGTGCGGCTTCGACCTCCACCCCTGCTGCGCCAAGCTTCCGGCGCTCCTCCAGGACGGCGAGGTGAAGCTCTACCTCTACCGGAAGGTGAGCTCGGCGTGCCACCGCTGCGGCCGGAAGGGGCGGAGCTGGAGTTACCGGTCCAAGTGCAAGAGCTACAATCTGCATGTGGCGTGCGTGAGGGAGATGGTGGTGGAGAATTGGCACGAGGTGTTTGTTAAGGGTGTTCCTGTGCTTGCTTACAGTGGTGGTCACACGAGTAGTCGGAGTAAGGGGAAGAAGAAGGTTAAGAATTGCTGTGAGATTGCCGCTTTGGCTTTGCAGTTTGTCATATCGGCTCTCTTGGGAGATCCAACGGCTCTCATTGCCGGCATTGTCGCCTCCTTCGTGTCAAGGGCTTGA 699 0.5765 MKYSEISHFSHPQHKLRFEYSEIPFKCDGCKEAGIGSRYKCSRCDFDLHMQCGMVTSPTLFHPFYGKCTFHFMSSPPGDTPRYCNACEKDVTGFVYHCKACGFDLHPCCAKLPALLQDGEVKLYLYRKVSSACHRCGRKGRSWSYRSKCKSYNLHVACVREMVVENWHEVFVKGVPVLAYSGGHTSSRSKGKKKVKNCCEIAALALQFVISALLGDPTALIAGIVASFVSRA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00477 232 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 2 231 - -
Cca04g00477 232 SUPERFAMILY Cysteine-rich domain 4 55 IPR046349 -
Cca04g00477 232 SUPERFAMILY Cysteine-rich domain 59 115 IPR046349 -
Cca04g00477 232 Pfam C1 domain 9 52 IPR004146 -
Cca04g00477 232 Pfam C1 domain 74 110 IPR004146 -
Cca04g00477 232 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 13 68 IPR002219 -
Cca04g00477 232 Gene3D - 18 64 IPR043145 -
Cca04g00477 232 Gene3D - 78 112 - -
Cca04g00477 232 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN PROTEIN 2 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00477 Cca-Chr4 4700817 4701733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00477 - - gmx:100790779 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00477 04 4700817 4701733 Cca04g00477 04 4700817 4701733 ECH