Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00472 ATGGCAACGAGGTCCCTGAGAGTGAGAGATGCTTTGGTATACCGTGACCATGTCCAAGCAATAAAGTCTGGTTTGGTGTCAAGCATTTTCACTTGTAATCAACTCATTCACCTTTATTCCAACCATGGCCTTTTGCAAGAGGCCCACAAACTGTTCGATGAAATGCCCCACCCAAATGTATTCTCTTGGAATGCCATAATCATGGCTTACATAAAAGCACACAACTTGACTCAAGCACGAGCCCTTTTTGACATTGCCTCTCACAGAGATTTGGTTTCTTATAATTCCATGTTATCAGCTTATGTTGGTGCTGACGGGTGCGAGACTGAGGCACGTGATTTGTTTGCTATTATGCAATCTGCACGTGACACAATTGGGATTGATGAGTTCACTCTCACAACCATGCTTAACCTTACAGCCAAACTACGTGTGCTGTGTTATGGGAAGCAGATGCATTCATATATGGTGAAAACGGCAAATGATTTAAGCAAGTTTGCTTTGAGTTCTCTCATAGATATGTACTCTAAATGTGGTTCCTTTCAAGAAGCATGCAATGTATTTAGCGGTTGTGATGGGATGGTGGACTTGGTTTCAAAGAATGCAATGGTTGCAGCTTGTTGTAGGGAAGGAAACATGAACATGGCCTTAAATGTATTTTGGAAAAATCCTGAACTGAATGATACTGTGTCTTGGAACACATTGATTGCAGGATACGCCCAAAATGGCTATATGGAGAAATCACTTACCTTGTTTGTTGAGATGATAGAAAATGGTATTGGTTTCAATGAACACACTTTAGCAAGTGTTTTGAGTGCCTGCTCTGGTCTAAAATGTTTAAAACTTGGCAAGTCTGTCCATGCTTGGGTGTTGAAAAAGCGTTACAGTTCGAATCAATTTATTAGCAGTGGCATTGTCGACTTCTACTGTAAGTGTGGGAATATCAGATATGCAGAGTTAGTCTATGCAGAAATTGGGGTTGAAAGTTCATTTGCAGTTGCCTCATTGATTGCAGGCTACTCATCTCAAGGTAACATGACAGAAGCCCAAAGGCTTTTTGATTCACTGTTGGAAAGAAACTCTGTTGTATGGACAGCTCTATGCTCGGGCTATGTCAAATCACAACAATGTGAGACAGTCTTCAAACTTTTCAGAGAGTTTATAACTAAAGAAGCACCAGTTCCTGATGGAATGATCATCATCAGTGTGCTTGGTGCCTGTGCAATACAAGCTGCCCTAAGTTTGGGAAAGCAAATTCATGCTTACATTTTGAGAATGAGATTTATTGTGGATAAGAAATTACTGAGTGCTTTAGTTGATATGTACTCAAAATGTGGAAATGTTATATATGCTGAGAAAATCTTCCGGCTAGTTACTGATAGTGATAGAGATGCAATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGTTTTGAAAATAAAGCAATTCGGCTTTTTCAGGAAATGTTGAATAAAAGTGTCAAGCCAGACGCAGTCACTTTTGTTGCACTTCTATCAGCTTGTCGACACCGTGGATTAGTAGAATTAGGAGAGCAATTTTTTATTTCCATGAAACAAGATTACAATGTATTGCCTGAAATTTATCACTATGCATGTATGGTCGATATGTATGGAAGGGCTAAGCAACTAGAAAAGGCAGTAGAATTCATGAGGAAGATTCCTATACAGATAGATGCTACTATCTGGGGAGCATTTCTTAATGCTTGTCAGATGAGCAGCGATGCAGCACTTGTCAAACAGGCAGAAGAGGAACTATTAAAAGTTGAGGCAGATAACGGGTCTAGATATGTGCAGTTGGCCAATGCCTATGCTTCCAAAGGGAAATGGGATGAGATGGGAAGAATAAGAAAGAAAATGAGAGGATACGAGGCTAAGAAGTTTGCTGGATGCAGTTGGATATATGTGGAAAATGGTATTCATGTATTTACTTCTGGTGATACATCTCATTCAAAAGCAGATGCAATATATTCAACTTTAATATGCTTGAATGGGAAACTACATATAAGGGGTGGTGATATTCAGTCAGAATCTCTAGCAAACGCAGTAAAGAGCAACACAACAATTAATTTGGAGTGA 2100 0.3943 MATRSLRVRDALVYRDHVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNLTQARALFDIASHRDLVSYNSMLSAYVGADGCETEARDLFAIMQSARDTIGIDEFTLTTMLNLTAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGSFQEACNVFSGCDGMVDLVSKNAMVAACCREGNMNMALNVFWKNPELNDTVSWNTLIAGYAQNGYMEKSLTLFVEMIENGIGFNEHTLASVLSACSGLKCLKLGKSVHAWVLKKRYSSNQFISSGIVDFYCKCGNIRYAELVYAEIGVESSFAVASLIAGYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCETVFKLFREFITKEAPVPDGMIIISVLGACAIQAALSLGKQIHAYILRMRFIVDKKLLSALVDMYSKCGNVIYAEKIFRLVTDSDRDAILYNVMIAGYAHHGFENKAIRLFQEMLNKSVKPDAVTFVALLSACRHRGLVELGEQFFISMKQDYNVLPEIYHYACMVDMYGRAKQLEKAVEFMRKIPIQIDATIWGAFLNACQMSSDAALVKQAEEELLKVEADNGSRYVQLANAYASKGKWDEMGRIRKKMRGYEAKKFAGCSWIYVENGIHVFTSGDTSHSKADAIYSTLICLNGKLHIRGGDIQSESLANAVKSNTTINLE 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00472 699 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Cca04g00472 699 TIGRFAM PPR: pentatricopeptide repeat domain 30 55 IPR002885 -
Cca04g00472 699 TIGRFAM PPR: pentatricopeptide repeat domain 229 260 IPR002885 -
Cca04g00472 699 Pfam PPR repeat 198 219 IPR002885 -
Cca04g00472 699 Pfam PPR repeat 168 187 IPR002885 -
Cca04g00472 699 Pfam PPR repeat 361 387 IPR002885 -
Cca04g00472 699 Pfam PPR repeat 334 359 IPR002885 -
Cca04g00472 699 Pfam PPR repeat 61 84 IPR002885 -
Cca04g00472 699 Pfam PPR repeat 30 55 IPR002885 -
Cca04g00472 699 Pfam PPR repeat 537 560 IPR002885 -
Cca04g00472 699 Pfam PPR repeat 435 456 IPR002885 -
Cca04g00472 699 Pfam PPR repeat family 463 509 IPR002885 -
Cca04g00472 699 Pfam PPR repeat family 227 273 IPR002885 -
Cca04g00472 699 Gene3D Tetratricopeptide repeat domain 480 662 IPR011990 GO:0005515
Cca04g00472 699 Gene3D Tetratricopeptide repeat domain 145 277 IPR011990 GO:0005515
Cca04g00472 699 Gene3D Tetratricopeptide repeat domain 278 418 IPR011990 GO:0005515
Cca04g00472 699 Gene3D Tetratricopeptide repeat domain 14 144 IPR011990 GO:0005515
Cca04g00472 699 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 396 - -
Cca04g00472 699 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 397 666 - -
Cca04g00472 699 Pfam E motif 582 641 IPR046848 -
Cca04g00472 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Cca04g00472 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Cca04g00472 699 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 397 666 - -
Cca04g00472 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Cca04g00472 699 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 35 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00472 Cca-Chr4 4676607 4679351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00472 65 667 Glycoside Hydrolase AT3G49170 31.023 6.59e-92 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00472 - - gmx:100803987 1228.77