Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00471 ATGCATGAAGCAAAGTGGCGCGATTCTGGTTTCAAGCAATTCAAGTCCATGGACCCAACCGTTTCAATTTCAAGTCACAAGCGCTCCAACAGTGACCCAATGAAAAGGAGAGTTATGAGAGATGGATTAGAGAACATTAGTGAAGCTTCATATCGGCCTGAAGTGGAACTGGGGGAACTAAAGCAAAGCATTGAATCCAAGAAGAGGCAATACAATAATATGGATCTACAAAGTTCTTTGACTCAAGAGATTCTACAGCTTCAAAAACGATTGCAACAACAATTTGTGATACGGCGTGCATTAGAGAAAGCGTGCTATGTTCCTTTTTCACAGGATGCTACAATAGAAACTTCAATACCCAAGGCTGCAAAAGAACTGATTAAGGAAATTGGAATATTAGAATTAGAAGTCGTGTATTTAGAACAATACCTACTCTCTTTGTATCGGAAAAGATTTGATCAGCAAATTTCATCTCTATCAACCAAGGAAAGAAGATTGGAATTAGCTTCAGACACTAATCAAGGAACATCTGCAGTGCCTGACAATGATGCTATCTCTGACAAAGAAATTTCAGTTGTGCACTGTAGTAATGTCATTTCACCCAGAAATTCAGCTGGCTTTCAGCTTAAGGAATGCAGTAACCAGTTGGAATCAGAAACTGTTTTAGACTCTAGTATTCATCGATGTCACTCTGCAATATCTCAACGAGCAGTGTGCTCGATTGAAGCTTCTCCTGGGAACATTGAGACCAAAGCTGTTGTTGACTCTTACCATTCTCTACCATTATCCATGTTAGAGCAAGCTCAGTGTGCTAAATCCAGTTCAACCAGCCTGGCAGAGCATCTTGGGAGTAGCTATGTTGATAATGTTCCAGAAACACCAAATTGGCTATCTGAGGAGATGATTAAGTGCATATCAGCTATATATTGTGAACTTGCAGAGCCACCTTCTCTTGGTCATAAACGTGCTTCATCCCCTATGTCATTCTCATCGTCCGGTAATGAGTTATCTTCACAGAGCCAGGGTAGTAAGTGGAAATCACAATGGAAGAAGAATTCATCCTTCAGTTTGAACTCCACTAACCCTTTCCATGTCAGAGGGTCCAAAGAATTTAGTGGACCTTATTGCTCAATGATAAGGATACAGCAATTATGCACAGATAATCAGAAATTAAAAGAAATTGAGTACATGCTACGAAGATTTAGGTCACTTGTTTCTCGGCTGGAAGATGTTAATCCTAGAAATATGAAGCATGAAGAAAAGCTTGCCTTTTGGATTAATGTGCACAATTCTTTAGCAATGCATGCCTTATTAGTTTATGGAATTTCAGCCAACAATGTTAAAAGAATGTCTTCGGTACTGAAGGCTGCATATAACATTGGGGGACATACTATAAGCGTAGACCTGATACAGAACTTCATTCTGGGATGCAGATTGCCTCGCCCAGGACAAGTAAATCTGATTTCCAGAAACTTCTAA 1479 0.3976 MHEAKWRDSGFKQFKSMDPTVSISSHKRSNSDPMKRRVMRDGLENISEASYRPEVELGELKQSIESKKRQYNNMDLQSSLTQEILQLQKRLQQQFVIRRALEKACYVPFSQDATIETSIPKAAKELIKEIGILELEVVYLEQYLLSLYRKRFDQQISSLSTKERRLELASDTNQGTSAVPDNDAISDKEISVVHCSNVISPRNSAGFQLKECSNQLESETVLDSSIHRCHSAISQRAVCSIEASPGNIETKAVVDSYHSLPLSMLEQAQCAKSSSTSLAEHLGSSYVDNVPETPNWLSEEMIKCISAIYCELAEPPSLGHKRASSPMSFSSSGNELSSQSQGSKWKSQWKKNSSFSLNSTNPFHVRGSKEFSGPYCSMIRIQQLCTDNQKLKEIEYMLRRFRSLVSRLEDVNPRNMKHEEKLAFWINVHNSLAMHALLVYGISANNVKRMSSVLKAAYNIGGHTISVDLIQNFILGCRLPRPGQVNLISRNF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00471 492 Coils Coil 57 77 - -
Cca04g00471 492 MobiDBLite consensus disorder prediction 321 343 - -
Cca04g00471 492 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 20 484 - -
Cca04g00471 492 MobiDBLite consensus disorder prediction 323 343 - -
Cca04g00471 492 Pfam Leucine-zipper of ternary complex factor MIP1 75 154 IPR025757 -
Cca04g00471 492 Pfam Protein of unknown function, DUF547 413 480 IPR006869 -
Cca04g00471 492 PANTHER UNCHARACTERIZED 20 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00471 Cca-Chr4 4671277 4675760 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00471 - - gmx:100803450 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00471 04 4671277 4675760 Cca04g00471 04 4671277 4675760 ECH