Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00467 ATGCTATCTCCGATGGCTCTCTCAGCGCATCTCTGCCGTATCCCCGCCACACGCGCCGACGTCGCTTTGCCGGAGACCAGAATCCGCTTCCGGAAACCGTTCTCCGTCAAATGCTCCGCGGACTCCTCTTCCGCGGCCGTGGACTCCGAGTTCGATCCTAAGGTGTTCCGGAAGAACCTCACTCGGAGCAAGAACTATAACCGCAAAGGCTTTGGACACAAAGAGGAAACCCTCCAGCTCATGAGTCGCGAGTACACGAGTGATATCATTAAGACTTTGAAGGAGAACGGGTATGAATATACATGGGGTCCTGTCACAGTGAAGCTGGCTGAAGCCTATGGATTCTGTTGGGGAGTTGAGAGGGCTGTTCAAATTGCTTATGAGGCCAGAAAACAGTTTCCCTCTGAGACTATATGGATTACCAATGAAATCATCCATAACCCTACTGTTAATAAGCGGCTGGAGGATATGAAAGTGCAAAATATTCCTCTGGATGGAGGTGAAAAGCAATTCGATGTGGTCAACAAGGGGGATGTGGTCATATTGCCGGCTTTTGGAGCAGCAGTGGAAGAGATGTTGACTTTGAGCGACAAAAATGTTCAGATTGTTGATACAACTTGCCCATGGGTTTCAAAGGTATGGAATACTGTTGAAAAGCACAAGAAAGGAGATTATACCTCTGTGATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTGGAAAGTATATAATTGTGAAGAATCTGACAGAGGCTGAATATGTTTGTGACTATATTCTGGGTGGTGAATTTAATGGATCCAGTTCAACCAAAGAAGCATTTTTAGAGAAATTTAAATTTGCAGTTTCTGAGGGCTTTGATCCAGACAAGGACCTGGTTAAAGTTGGCATCGCAAATCAGACAACAATGCTCAAGGGAGAGACAGAAGAGATTGGGAGACTACTGGAGAGGACTATGATGCAGAAATTTGGTGTGGAGAACGTCAATGAGCACTTCATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATGTTCAAACTGGTGGAGGAAGATATTGATCTTATGTTAGTAGTTGGTGGATGGAATTCTAGCAATACATCACATCTGCAAGAGATAGCTGAGTTACGTGGAATTCCTTCTTATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTGAATCACGGAGAGCTAGTGGAGAAAGAAAATTGGCTGCCAGCAGGTCCAATAACAATCGGTGTAACATCTGGTGCATCCACACCAGACAAGGTTGTTGAAGATGCGCTTATCAAGATTTTTGACTTGAAACGGGAAGAAGCGATGCAACTTGCGTAA 1383 0.4469 MLSPMALSAHLCRIPATRADVALPETRIRFRKPFSVKCSADSSSAAVDSEFDPKVFRKNLTRSKNYNRKGFGHKEETLQLMSREYTSDIIKTLKENGYEYTWGPVTVKLAEAYGFCWGVERAVQIAYEARKQFPSETIWITNEIIHNPTVNKRLEDMKVQNIPLDGGEKQFDVVNKGDVVILPAFGAAVEEMLTLSDKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSVIHGKYAHEETVATASFAGKYIIVKNLTEAEYVCDYILGGEFNGSSSTKEAFLEKFKFAVSEGFDPDKDLVKVGIANQTTMLKGETEEIGRLLERTMMQKFGVENVNEHFISFNTICDATQERQDAMFKLVEEDIDLMLVVGGWNSSNTSHLQEIAELRGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPAGPITIGVTSGASTPDKVVEDALIKIFDLKREEAMQLA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00467 460 Gene3D - 208 327 - -
Cca04g00467 460 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 107 448 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Cca04g00467 460 Pfam LytB protein 107 445 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Cca04g00467 460 Gene3D - 328 460 - -
Cca04g00467 460 CDD lytB_ispH 107 448 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Cca04g00467 460 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 9 458 - -
Cca04g00467 460 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 105 452 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Cca04g00467 460 Gene3D - 116 206 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00467 K03527 - gmx:100818067 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00467 04 4633220 4636442 Cca04g00467 04 4633220 4636442 ECH