Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00466 ATGAAGGCTTTGAGTACCATAAACTCCTCAAATCCATGTCTTCCCGAAACCCATTTCCTCAAAGTCCCTATCTTTCACCCCTTCTTCAGGTTCAAGCCATTCTCACACTCATACAACACCCATGGCCATGTCCATGGTGCAAAGAGAGCTCATACTCTTCCATTCGCCATCAACTGCAAGCTTAAAAACTCTCAAGACATAAAAAACAATGGGAAGAGTGTGCCACAGAAGATTGTCTTATCAGAGGTGTCCCCTCCACCACTCACAGAGGATGCTGAGAACAGTGAGGATGTTCCAGAAAGCTCAAAGAAGAAGGGAAGCCCTTTTGGGGTGGTGAGGATGCTGAGAAGGAAGACGTTGCAGATTCTCTCTAATTTGCCGTTGGCTATTGGGGAAATGTTCACAGTTGCTTCTTTGATGGCTTTGGGCACATTTATTGATCAAGGAGAAGCCCCCGAGTTTTATTTCCAGAAATACCCTGAAGATCATCCCGTGTTTGGATTTTTTACTTGGAGATGGGTTCTTGCCCTTGGTTTTGATCACATGTTTTCATCCCCTATATTTCTTGGAGTGTTGGCTCTGCTGGGTGCATCCCTCATGGCTTGCACTtacacaactcagcttcccctcatcaaggtttcaagaagATGGTCGTTTTTACACTCTGCTGAAGCCATACGTAAGCAGGAATTTTCAGAATCGTTGCCAAGAGCATCAATCCAAGATGTTGGTACTATATTGATGGGAGCTGGATACGAGGTATTCTTGAAAGGACCATCCTTATATGCTTTTAAAGGGCTTGCAGGTCGGCTGGCCCCTGTTGGAGTCCATATAGCAATGATACTGATAATGGCTGGAGGAACTCTTAGTGCTACTGGGAGCTTCAGAGGTTCAGTCACTGTGCCACAGGGGCTTAATTTTGTTGTAGGTGATGTTCTGGCTCCTAATGGCTTTCTCTCCTCTCCAACTGAGGCTTTTAATACAGAAATTCATGTCAACAGATTCTACATGGATTATTATGAGAGTGGAGAGGTTTCGCAGTTTCACACTGATCTTTCCCTTCTTGACATGGATGGGAAAGAAGTAATGAGGAAAACAATCAGTGTAAATGATCCTTTGAGGTATGGGGGTATCACCATATATCAGACAGATTGGAGTATTTCGGCTCTGCAAATTCTTAAGGACAATGAAGGACCTTATAACTTGGCTATGGCACCTCTACAGATCAATGGAGATAAGAAACTTTTTGGTACTTTTCTACCAGTTGGAGACATTAACTCTCCTGATGTTAAGGGAATATCTATGCTTGCTCGTGATCTACAGTCAATTGTCCTTTATGATAAGGAAGGGAAATTTGCGGGAGTTAGAAGGCCTAATTCAAAGCTCCCAATCAATATTGATGGCTCAGAAATTGTCATTGTTGATGCAATAGGAAGTAGTGGCTTGGACTTAAAGACTGACCCTGGTGTGCCACTTGTATATGCTGGATTTGGTGCTCTAATGATCACTACTTGCATCAGCTATTTGTCTCATTCTCAGATATGGGCCTTACAAGATGGGACAACAGTCATCGTTGGAGGGAAGAGTAACAGAGGAAAGATGGAGTTTCCAGAGGAGATGAATCTCTTACTTGAGAAGGTCCCTGAAATAGTTGAATCAACTCTTAGTGGTTAG 1674 0.4229 MKALSTINSSNPCLPETHFLKVPIFHPFFRFKPFSHSYNTHGHVHGAKRAHTLPFAINCKLKNSQDIKNNGKSVPQKIVLSEVSPPPLTEDAENSEDVPESSKKKGSPFGVVRMLRRKTLQILSNLPLAIGEMFTVASLMALGTFIDQGEAPEFYFQKYPEDHPVFGFFTWRWVLALGFDHMFSSPIFLGVLALLGASLMACTYTTQLPLIKVSRRWSFLHSAEAIRKQEFSESLPRASIQDVGTILMGAGYEVFLKGPSLYAFKGLAGRLAPVGVHIAMILIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLAPNGFLSSPTEAFNTEIHVNRFYMDYYESGEVSQFHTDLSLLDMDGKEVMRKTISVNDPLRYGGITIYQTDWSISALQILKDNEGPYNLAMAPLQINGDKKLFGTFLPVGDINSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVIVDAIGSSGLDLKTDPGVPLVYAGFGALMITTCISYLSHSQIWALQDGTTVIVGGKSNRGKMEFPEEMNLLLEKVPEIVESTLSG 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00466 557 Pfam ResB-like family 128 392 IPR007816 -
Cca04g00466 557 Pfam ResB-like family 428 540 IPR007816 -
Cca04g00466 557 MobiDBLite consensus disorder prediction 84 107 - -
Cca04g00466 557 PANTHER CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC 85 553 IPR023494 -
Cca04g00466 557 Hamap Cytochrome c biogenesis protein Ccs1 [ccs1]. 116 545 IPR023494 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00466 18 556 Miscellaneous Gene Families AT1G49380 67.276 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00466 K07399 - gmx:100807003 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00466 04 4628035 4632490 Cca04g00466 04 4628035 4632490 ECH