Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00465 ATGGACATTGATTTCAAAGAATATCAATTGCGCTGTGAGCTTCGCGGCCACGAAGACGATGTTCGCGGAATATGCGTGTGTGGCAGCGAGGGCATTGCAACCTCCTCCAGGGACCGAACGGTTAGGTTCTGGTCTCTGGATGACCGCAAGTTCGTGAGTTCCAAGGTTCTGTTGGGGCACACGAGCTTTGTGGGACCCTTGGCATGGATTTCCCCCAATTCGGAGTTCCCGAAAGGTGGGGTTGTGTCTGGCGGCATGGACACTCTGGTCTTTGTCTGGGACTTGAACACCGGCGAGAAGGTCCACTCTCTCAAGGGCCATCAGTTACAGGTCACTGGCATTGCAATTGATGATGCTGATGTTGTGTCTTCTTCCGTTGATTGTACCCTAAGACGGTGGAGGAATGGGCAATCTGTAGAGACGTGGGAGGCTCATAAGGCACCAGTCCAAGCAGTTATCAAGCTGCCCACGGGGGAGCTTGTTACTGGTTCAAGTGACACTACGTTAAAGCTTTGGAGAGGAAAAACTTGTTTGCACACCTTTGAAGGACATTCAGATACAGTTCGAGGCTTGTCTGTGATGTCTGGTCTTGGAATCCTATCTGCATCCCATGATGGTTCTCTCAGATTGTGGGCAGTTAGTGGTGAAGTGTTAATCGAGATGGTTGGTCATACGGCTATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGCGAAGACCGTTTTGCCAAAATTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGCGTTTGGGATGCAAAATTTATGGAAAATGGGGATATTGTGACAGCATGTTCAGATGGAGTTGTACGCATTTGGACCGTAGATAAGGATAATGTTGCTGACCAAGTAGAGCTTGATTTATACACATCACAACTTTCTGAATACAAATCTAGCAGAAAGAGGGTTGGAGGATTGAAGTTGGAAGAGCTACCAGGCTTGGAGGCACTGAAGATTCCAGGAACTACCGATGGCCAGACAAAAGTAGTTAGAGAGGGTGATAATGGGGTGGCATATGGGTGGAACATGAAAGAACAGAAGTGGGATAAAATTGGTGAAGTTGTTGATGGACCAGAGGAGTCAAATTCAAATCGCCAATTTTTTGATGGTATTCAGTATGATTATGTGTTTGATGTGGATATTGAAGATGGAATGCCTACCCGTAAGTTGCCATACAATCGAACAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAATCTTCCTCTTTCTTTTCGTGAGCAAATTGTACAGTTCATTCTTCAAAATACTGGACAAAACAATATTACTTTTGATTCTTCATTTCGTGACCCCTACACTGGCTCCCATGCTTACGTACCAGGACAACCTTCTCGTACATCTGATGTTTCTGCGAAACCTACTCTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATGCAGCTCAGTTTGATGGGATTCTTAAAAAGATTACCGAGTTCAATAAAGCTTTACAATCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAGCTTAATGTTTCCAGACTGGGTGCCATTGTTAAAATTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTGCAGACTCTGATATAGCCTTGTTAATAAATCTGCTTCAATCATGGCCAAATGCAATGATATTTCCTGTCATTGATATTGTAAGGATGCTAGTTCTTCATCCAGATGGGGCTATTTTACTTCAGAAGCATTTTGAAGCAGAAAATGACATACTTATGGAAGTGATTAAGAAAGTCACTGTAAATCCAACAATTCCTGCGAATCTGTTGACCAGCATTCGTGCTGTAACTAATCTCTTCAGGAATTCGTGCTACTCCAACTGGTTACAGAAACATCGTAGTGAGATTCTTGATGCTTTCTCAAGTTGTAGTTCATCGTCAAACAAAAATTTGCAGTTATCATACTCTACCTTGTTACTAAATTATGCTGTGCTATTGATTGAATCAAAGGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCTCTTGAGATTGCAGAGGATGAAAATGTAGAAGTTGATTCCAAATTTCGTGCTTTAGTTGCTGTTGGATCATTGATGCTTGAGGGACTTGTCAAAGAAATAGCTCTGGATTTTGATGTTTTGAACATTGCAAAAGCAGCTAAGAGTTCTAAGGATACCAAGATTGCTGAAGTCGGATCTGATATTGAGCTGTTATCAAAGCAGAAGTGA 2274 0.4226 MDIDFKEYQLRCELRGHEDDVRGICVCGSEGIATSSRDRTVRFWSLDDRKFVSSKVLLGHTSFVGPLAWISPNSEFPKGGVVSGGMDTLVFVWDLNTGEKVHSLKGHQLQVTGIAIDDADVVSSSVDCTLRRWRNGQSVETWEAHKAPVQAVIKLPTGELVTGSSDTTLKLWRGKTCLHTFEGHSDTVRGLSVMSGLGILSASHDGSLRLWAVSGEVLIEMVGHTAIVYSVDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTVDKDNVADQVELDLYTSQLSEYKSSRKRVGGLKLEELPGLEALKIPGTTDGQTKVVREGDNGVAYGWNMKEQKWDKIGEVVDGPEESNSNRQFFDGIQYDYVFDVDIEDGMPTRKLPYNRTDNPYDVADKWLLKENLPLSFREQIVQFILQNTGQNNITFDSSFRDPYTGSHAYVPGQPSRTSDVSAKPTLKHIPKKGMLVFDAAQFDGILKKITEFNKALQSDQEKQNLSLTELNVSRLGAIVKILKDTSHYHSSKFADSDIALLINLLQSWPNAMIFPVIDIVRMLVLHPDGAILLQKHFEAENDILMEVIKKVTVNPTIPANLLTSIRAVTNLFRNSCYSNWLQKHRSEILDAFSSCSSSSNKNLQLSYSTLLLNYAVLLIESKDQEGQSQVLSAALEIAEDENVEVDSKFRALVAVGSLMLEGLVKEIALDFDVLNIAKAAKSSKDTKIAEVGSDIELLSKQK 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00465 757 Pfam WD domain, G-beta repeat 218 252 IPR001680 GO:0005515
Cca04g00465 757 Pfam WD domain, G-beta repeat 98 133 IPR001680 GO:0005515
Cca04g00465 757 Pfam WD domain, G-beta repeat 137 172 IPR001680 GO:0005515
Cca04g00465 757 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Cca04g00465 757 Pfam WD domain, G-beta repeat 255 289 IPR001680 GO:0005515
Cca04g00465 757 Pfam WD domain, G-beta repeat 176 211 IPR001680 GO:0005515
Cca04g00465 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 172 IPR001680 GO:0005515
Cca04g00465 757 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Cca04g00465 757 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Cca04g00465 757 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Cca04g00465 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Cca04g00465 757 ProSiteProfiles PFU domain profile. 356 453 IPR015155 -
Cca04g00465 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 211 IPR001680 GO:0005515
Cca04g00465 757 Pfam PFU (PLAA family ubiquitin binding) 336 446 IPR015155 -
Cca04g00465 757 Gene3D - 375 451 IPR038122 -
Cca04g00465 757 Gene3D - 482 753 IPR011989 -
Cca04g00465 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 103 IPR001680 GO:0005515
Cca04g00465 757 Pfam PUL domain 484 749 IPR013535 -
Cca04g00465 757 CDD WD40 10 289 - -
Cca04g00465 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 252 IPR001680 GO:0005515
Cca04g00465 757 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 753 - -
Cca04g00465 757 SMART WD40_4 253 290 IPR001680 GO:0005515
Cca04g00465 757 SMART WD40_4 214 252 IPR001680 GO:0005515
Cca04g00465 757 SMART WD40_4 7 45 IPR001680 GO:0005515
Cca04g00465 757 SMART WD40_4 174 212 IPR001680 GO:0005515
Cca04g00465 757 SMART WD40_4 135 173 IPR001680 GO:0005515
Cca04g00465 757 SMART WD40_4 97 134 IPR001680 GO:0005515
Cca04g00465 757 SMART WD40_4 50 94 IPR001680 GO:0005515
Cca04g00465 757 SUPERFAMILY WD40 repeat-like 5 303 IPR036322 GO:0005515
Cca04g00465 757 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Cca04g00465 757 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 753 - -
Cca04g00465 757 Gene3D - 4 307 IPR015943 GO:0005515
Cca04g00465 757 ProSiteProfiles PUL domain profile. 482 753 IPR013535 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00465 1 756 Acyl Lipid Metabolism Gene Families AT3G18860 71.278 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00465 K14018 - gmx:100816481 1388.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00465 04 4612935 4625586 Cca04g00465 04 4612935 4625586 ECH