Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00458 ATGATAGGACGCAGAGACAGAGACGGACCCTTGATGAGGAGCAACAGCACTCACTCTCTACGCAAATCCAGAATCATATCTGCAGTCGCAATTGGGGTTCTTATTGGCTGCATTTTCGCTTTCTTGTTCCCCAATGGCTTCTTCGTCTCCGACACTGTTATTAGCCCTAATCGCAATCTTCCTCTCGCGGGATCCAGGACCCAGGAAAATTCAGCTGGATGTGAATCCTCGGATCGTGTCAACATGTTGAAATCAGAGTTTGTGGCGGTATCAGATAAAAATGCTGAGCTGAAAAAACAGGTGAGGGAATTGACTGAAAGGCTTCGGCTTGCAGAGCAAGGGAAAGACCAGGCTCAAAAGCAATTCCTTACATTAGGTAAACAGTATAAAGCTGGACCTTTTGGTACTGTAAAGGGATTAAGAACCAACCCTACTGTCGTTCCTGATGAATCTGTGAATCCAAGATTGGCAAAGATATTAGAGAAAGTTGCAATTAAACGAGAGATTATAGTTGCTCTTGCAAACACCAATGTGAAGGAGATGCTGGAGCTCTGGTTTACCAATATCAAGAGAGTTGGCATAACCAATTATCTGGTTGTTGCTTTAGACGATGAGATTGCAAAGTATTGTGAATCAAATCAAGTTCCAGCGTATAAAAGAGATCAACATGATGGTGTTGATGTCATTGGAAGAACAGGGGGCAACCATGCTGTCTCTGGTCTTAAATTTCGTATTCTAAGAGAATTTTTGCAGTTGGGATACAGTGTTCTTCTATCAGATGTTGACATTGTATATTTGCAGAATCCTTTCGATCATCTATACCGGGATTCAGACGTGGAGTCCATGAGCGATGGTCATAATAACATGACAGCTTATGGCTTTAATGATGTCTTCGATGAACCTGCGATGGGTTGGGCTCGATATGCTCATACCATGAGGATATGGGTTTTCAACTCTGGTTTCTTCTATATCAGACCAACAATCCCTTCAATTGAGCTTTTGGATCGTGTGGCAACACGGCTTTCAAAGGAGAACGCGTGGGACCAGGCTGTTTTCAACGAGGAACTATTCTACCCCTCACATCCTGGTTATGATGGGCTTCATGCTGCCAGAAGAACTATGGATATGTATCTCTTCATGAACAGCAAGGTTCTGTTCAAGACAGTGAGGAATGATGCTAACCTGAGCAAATTGAAGCCAGTAATTATTCATGTGAATTACCACCCTGAAAAGCTTCCCCGAATGAAAGCAATTGTTGAATACTACATTAATGGGAAGCAGGATGCTCTCAAACCTTTCCCTGATGGCTCAGAATGGTACCCTTGCTTCTGCAGCCGATGCTATATTCTCTTGCTGTCTCAATTGTTCAGAACAGTTTTACAGTAG 1386 0.43 MIGRRDRDGPLMRSNSTHSLRKSRIISAVAIGVLIGCIFAFLFPNGFFVSDTVISPNRNLPLAGSRTQENSAGCESSDRVNMLKSEFVAVSDKNAELKKQVRELTERLRLAEQGKDQAQKQFLTLGKQYKAGPFGTVKGLRTNPTVVPDESVNPRLAKILEKVAIKREIIVALANTNVKEMLELWFTNIKRVGITNYLVVALDDEIAKYCESNQVPAYKRDQHDGVDVIGRTGGNHAVSGLKFRILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMSDGHNNMTAYGFNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVATRLSKENAWDQAVFNEELFYPSHPGYDGLHAARRTMDMYLFMNSKVLFKTVRNDANLSKLKPVIIHVNYHPEKLPRMKAIVEYYINGKQDALKPFPDGSEWYPCFCSRCYILLLSQLFRTVLQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00458 461 Pfam Nucleotide-diphospho-sugar transferase 194 411 IPR005069 -
Cca04g00458 461 PANTHER ARABINOSYLTRANSFERASE RRA3 13 443 IPR044290 GO:0016757|GO:0080147
Cca04g00458 461 SUPERFAMILY Nucleotide-diphospho-sugar transferases 170 373 IPR029044 -
Cca04g00458 461 PANTHER ARABINOSYLTRANSFERASE RRA1-RELATED 13 443 - -
Cca04g00458 461 Coils Coil 87 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00458 Cca-Chr4 4546050 4548722 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00458 K20783 - gmx:100804189 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00458 04 4546050 4548722 Cca04g00458 04 4546050 4548722 ECH