Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00454 ATGGTAGCTCAAGCTTTATCAGTGCCTGCGAGTGCTAGCTTCACTATCGCTTCTCGCGCGAGAAGTCCCTCTCGCCTTCTATTTTATCGCAGAAACTCGTGCTCGGTAGCTTCTTCTTTGCCAAGCCCATATGGCCATTCATCAGAAGTTGGGTTATCAAGTAAAAGCCGTGGCCTTCCTCTAAAACTGGATGAGAAAAATATCTATGATGCCAGTACAAGTTATGGTGCAATTGAAGCCAAGAAGGGGAATCCAGCAATAACACCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCTCATCTGTTTTGTTTAGGAATCGAATAATATTCATAGGACAGCCAGTCAATTCACAAGTGGCTCAGAGAGTTATATCACAGCTTGTGACTCTTGCTACTATTGATGAAAATGCAGATATACTGATATATATAAATTGCCCTGGTGGAAGCACATATTCAGTGTTAGCAGTTTATGATTGTATGTCTTGGATAAAGCCCAAGGTTGGTACCGTGTGTTTTGGAGTTGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGTGGGGAGAAGGGAATGCGCTATGCAATGCCAAATGCCCGCATAATGATACATCAACCACAGAGTGGATGTGGGGGTCACGTGGAGGATGTCAGACGCCAAGTGAACGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTTACTGGACAACCATTGGAAAAGGTGCAACAGTACACTGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 825 0.4461 MVAQALSVPASASFTIASRARSPSRLLFYRRNSCSVASSLPSPYGHSSEVGLSSKSRGLPLKLDEKNIYDASTSYGAIEAKKGNPAITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDENADILIYINCPGGSTYSVLAVYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00454 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00454 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 15 274 IPR023562 -
Cca04g00454 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 15 274 - -
Cca04g00454 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00454 274 Gene3D - 78 274 - -
Cca04g00454 274 SUPERFAMILY ClpP/crotonase 98 272 IPR029045 -
Cca04g00454 274 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Cca04g00454 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00454 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00454 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00454 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00454 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00454 274 Pfam Clp protease 99 272 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00454 Cca-Chr4 4491846 4496119 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00454 K01358 - gmx:100799710 502.286