Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00451 ATGTTCGGAAGAAAAGCGCAGCACAGTTACACTAAACCAAATATTTTTTTTTTCCCTAACGCctctctctttctctttctccttctcgtctcGATGGAGGAGAAACGCCGCGACGCCGCTCCCTCCGCCGCCGATTCGCCGGCATCGGAGCCCGCATCGTCTCGCCGCCGCGCCGGAGCCAGCAAGAGGAAGTCCTCCGCCCTCAGCGCCTCCGGTTCCTCCTCCGCGCCCTCCAAACGCGCCAAGGCCTCGCCTCTCCACCCTCTTCCCCTCCACAATGGCCCCCTCACTAGGGCTCGCCAAACCCCTAGCAACCTCGCCGCCGCCGCCTCCTCTTCCGCCGGAGCCGCCGCTTCCTCTCCTTCCGCCGTGAAACACTCCGCCCTCGCCCACTCCTCCGACTCCGCCGCGCTGGCGGAGCAGCTCAAGAAGGAGAGCGAGTGGGAGACTCTCGAGGCTGCGATTGAAGCTCAATTCGAAGCTATCAGATCTCGCGGTGCCAATGCGCACGTGGTTCCCACTCATTGCGGTTGGTTTTCATGGTCACATATCCATTCAATTGAGAAGCGAATGTTGCCTTCTTTCTTTAATGACAAAACTGAAAATCGGACTCCTGATGTATACATGGAGATACGGAATTGGATAATGAAGAAATTTCATTCAAATCCAAACATTCAAATTGAATTGAAAGATATGTCAGAGCTTAATGTTGGAGACTTGGATGCTAGACAAGAGGTAATGGAGTTTTTGGACTACTGGGGTTTAATTAACTTCCACCCATTCCCTTCAATGGATTCTGCTGCGGTCACTGCCGCTGATGATGGGGAAGCAGAAAAGAATTCTTTGCTTGAAAAATTATATCACTTTGAAACTCTTCAATTACGCCCTCCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACGACCTCTGGCTTGTTTCCAGAGTCCACAATTACTGAAGAGTTGGTGAAACAAGAGGGGCCAGCAGTTGAGATGCTTGAGTACCATTGCAACTCTTGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGACCTATGTACCGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGACTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAAATGGACTGATCAAGAGACCCTTTTGCTCCTTGAAGCATTAGAACTTTATAAAGAAAATTGGAATGAAATTGCAGAACATGTTGGAACGAAAACAAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCCATTGAGGATACCTTTGTTGATTGTGGTGATGATGTTGATGCTGGTTGTAAAGAAACTGTGGATCCAGTTGCCACAAACAATGACTCATCTATGGACAAGGATGCTTCAGAATGTGTTGAGAATGATACTAATGATGGCATCAAAGACCATGATAAAGCTTCCAAGGCTGAAGATGTTGAAGTGAATGTGAATCAGGAGGAGACTCCAAAGTTACAAGGCAGTGATGAGAAAGCTAGCGAGGGAACATCTAAATCAGAAGAAGCTGCTAAGGTGAAGTTTGATCAGGAAGCAGGCAATGACTGTGCTATAAATGCTCTTAAGGAAGCATTTGCAGCAGTTGGTTATTCTCCTGGACCTGAAGGCCCTTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCACTGGCAACTTTCCTTGCACACTTGGTGGGTTCTGATGTGGCTGTTGCTTCAGCTCATAGCTCTATAAAATCCATGTCAAGAAATTCTCCTGGCACCGAGCTTGCTGCAAGGTGTTGCTTTCTTCTAGAAGGTCCACCAGACAATAAGAAGGAACCTACTAGTTCTGAGAGGGATTCTAAAAGTGAGGGAGATCAGGTTGAAGTAAATGTAAAACAAGATAAACCGATGTTGGATGATAAAGATTTGCCAAACGATCAAAATAATATGAACATTGAAAGTAATGCTTCAGAAGACAAGGGACAACCAGCTTCTACAGATGATGGAGCTTCAGAAAAAACAATTTCCTCAAAAGAGCAAGCAAAGATTAATCATGAATGTGGGCCTGACAATTGTAATGATCCCAACAATGCAAAGCTACCCAATGATCAAGCACCAGGCACTCGGCAAAATTCAGGTGTTTCAACTTCCAAGGCTGAAATTCCACCTAGTTCTGACAAGGCTCAGGCGGGAACTTCAATTGAAGAACCTTCCCATTCTGTAAAGGATGGACATGCGTCTGATTCTCTTCCACCAGAGAAGAAAGAACCCCGTCAGTCAATTAAATCCAGTTCACCAGGAGAGCATTCAAAGCCATTAGAGACATCAAAAAATGTCGAGGTGGTTTCTGATTCTGTTCCCCCAGCTAAGAGCAAGCCTGAAAATTCAGAATCTACAAATCCAGTTTGTGAATCACTAGAAACAGCAAACTCAGTAATGGATGTTGATGGAGTTTCTAATTCCTTGCCATCGGAAAAGATTGACTCTCAGCCACTAATTGCATCAAAATCATCCCAATGTAATGGGACCGAAAAAGATGTAGATGTGATGTCACCTTCAAATCCAGTTAGATCAAATTCTGGTGCTGAAAATGGTtcaaatacagGGTCAGGTAAAGATCATGCTGATAATGGAGCAAAAGTGGAAGACGATGGTATGAATACTAAACAGGATAGTAATTTTGAGAAACTGAAACGTGCTGCAGTTTCTACACTTGCTGCAGCAGCAGTAAAAGCAAAACTTCTAGCAAATCAGGAAGAGGACCAAATCCGACATCTTACTTCCTTGTTGATAGAAAAGCAGTTACACAAGTTGGAAACAAAGTTGGCATTTTTCAATGATGTGGAGAATGTGGTGATGAGGGCAAGGGAGCATGTAGAGAGATCACGACATAAGCTTTATCATGAGCGTGCTTTGATAATTGCCTCACGGCTTGGTTTACCAGCTTCCTCATCTAGAGGTGTACCACCATCTGTACCAACCAGTAGAATTCCTACGAATATTGCAAACTCATTCCCAAGACCACAAATGATGATGAATCCTCAAAGGCCACTAATCTCTAGACCTGCAGGCACTGTGGCTACTACTCTTCAAAACCCATTAGCATCTTCAACTGCAGCAGGAAATTCAGTTCGACCATCTAACCAGGAAAAGCTTTCTTCTGTTGGGACAAAATAA 3204 0.4444 MFGRKAQHSYTKPNIFFFPNASLFLFLLLVSMEEKRRDAAPSAADSPASEPASSRRRAGASKRKSSALSASGSSSAPSKRAKASPLHPLPLHNGPLTRARQTPSNLAAAASSSAGAAASSPSAVKHSALAHSSDSAALAEQLKKESEWETLEAAIEAQFEAIRSRGANAHVVPTHCGWFSWSHIHSIEKRMLPSFFNDKTENRTPDVYMEIRNWIMKKFHSNPNIQIELKDMSELNVGDLDARQEVMEFLDYWGLINFHPFPSMDSAAVTAADDGEAEKNSLLEKLYHFETLQLRPPVQRSSQMTPATTSGLFPESTITEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCTDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCILHFVQMPIEDTFVDCGDDVDAGCKETVDPVATNNDSSMDKDASECVENDTNDGIKDHDKASKAEDVEVNVNQEETPKLQGSDEKASEGTSKSEEAAKVKFDQEAGNDCAINALKEAFAAVGYSPGPEGPSSFAEVGNPVMALATFLAHLVGSDVAVASAHSSIKSMSRNSPGTELAARCCFLLEGPPDNKKEPTSSERDSKSEGDQVEVNVKQDKPMLDDKDLPNDQNNMNIESNASEDKGQPASTDDGASEKTISSKEQAKINHECGPDNCNDPNNAKLPNDQAPGTRQNSGVSTSKAEIPPSSDKAQAGTSIEEPSHSVKDGHASDSLPPEKKEPRQSIKSSSPGEHSKPLETSKNVEVVSDSVPPAKSKPENSESTNPVCESLETANSVMDVDGVSNSLPSEKIDSQPLIASKSSQCNGTEKDVDVMSPSNPVRSNSGAENGSNTGSGKDHADNGAKVEDDGMNTKQDSNFEKLKRAAVSTLAAAAVKAKLLANQEEDQIRHLTSLLIEKQLHKLETKLAFFNDVENVVMRAREHVERSRHKLYHERALIIASRLGLPASSSRGVPPSVPTSRIPTNIANSFPRPQMMMNPQRPLISRPAGTVATTLQNPLASSTAAGNSVRPSNQEKLSSVGTK 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00451 1067 MobiDBLite consensus disorder prediction 704 745 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 653 680 - -
Cca04g00451 1067 ProSiteProfiles SANT domain profile. 393 440 IPR017884 -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 469 526 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 996 1019 - -
Cca04g00451 1067 ProSitePatterns Zinc finger ZZ-type signature. 337 363 IPR000433 GO:0008270
Cca04g00451 1067 SUPERFAMILY Homeodomain-like 177 259 IPR009057 -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 1031 1067 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 458 526 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 884 898 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 798 882 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 772 791 - -
Cca04g00451 1067 Pfam SWIRM-associated region 1 913 989 IPR032451 -
Cca04g00451 1067 SMART sant 390 438 IPR001005 -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 747 771 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 40 112 - -
Cca04g00451 1067 Pfam Myb-like DNA-binding domain 392 434 IPR001005 -
Cca04g00451 1067 Gene3D - 389 440 - -
Cca04g00451 1067 CDD SANT 410 435 IPR001005 -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 992 1067 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 64 80 - -
Cca04g00451 1067 Gene3D - 176 261 IPR036388 -
Cca04g00451 1067 Pfam Zinc finger, ZZ type 334 369 IPR000433 GO:0008270
Cca04g00451 1067 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 389 428 IPR017930 -
Cca04g00451 1067 SMART zz_5 331 375 IPR000433 GO:0008270
Cca04g00451 1067 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 72 1031 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 97 112 - -
Cca04g00451 1067 ProSiteProfiles SWIRM domain profile. 170 267 IPR007526 GO:0005515
Cca04g00451 1067 ProSiteProfiles Myb-like domain profile. 386 436 IPR001005 -
Cca04g00451 1067 SUPERFAMILY RING/U-box 327 380 - -
Cca04g00451 1067 PANTHER SWI/SNF COMPLEX-RELATED 72 1031 - -
Cca04g00451 1067 MobiDBLite consensus disorder prediction 619 651 - -
Cca04g00451 1067 Gene3D - 329 378 IPR043145 -
Cca04g00451 1067 ProSiteProfiles Zinc finger ZZ-type profile. 332 386 IPR000433 GO:0008270
Cca04g00451 1067 Pfam SWIRM domain 173 258 IPR007526 GO:0005515
Cca04g00451 1067 MobiDBLite consensus disorder prediction 612 898 - -
Cca04g00451 1067 CDD ZZ_RSC8 335 379 IPR041984 -
Cca04g00451 1067 SUPERFAMILY Homeodomain-like 389 441 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00451 Cca-Chr4 4447844 4454131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00451 335 432 EF-hand Containing Proteins AT3G07740 37.069 1.40e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00451 K11649 - gmx:100799723 1646.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00451 04 4447844 4454131 Cca04g00451 04 4447844 4454131 ECH