LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g00449	ATGGCTCAACCGCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCTGAGTATTCTCCATTTTTGGGAATTGAAAAGGGAGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCACAGCTAGATGCCAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTGCTGAATCAGGGGGAGACATTTACCAAGGTTGAGGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTCGAGATCTTGGGTTAAGAAGAATGGTCTACCTGATAATAAAGGAACTCTCTCCCTCTGCAGATGAGGTTATTATTGTTACGAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAATGCCATTCGTGTGCTCTGTCGTATCACGGATGGAACTCTCCTTACTCAAATTGAGCGATATTTAAAACAAGCTATTGTCGATAAGAATCCAGTTGTTGCAAGTGCGGCCCTAGTTAGTGGCATTCATCTGCTCCAGACAAATCCTGAGATTGTTAAGAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGGGCAGCTCTTGTGCAATTTCATGCACTGGCTTTGCTGCATCAGATACGGCAAAATGATAGGCTAGCTGTTAGCAAGCTGGTTACCAGCTTGACCAGGGGAAATGTTCGCTCTCCTTTGGCCCAATGCCTTTTGATCCGTTATACAAGTCAGGTTATTCGTGAGTCAGGGAATAATACACAATCTGGGGACCGCCCTTTCTATGATTTTCTTGAGAGTTGCCTTCGTCACAAGTCAGAAATGGTGATTTTTGAATCTGCCAGGGCAATTACAGAGCTCAATGGAGTAACTAGCCGAGAATTAACCCCCGCAATTACTGTTCTTCAGCTCTTCTTAAGTTCTTCTAAGCCAGTCTTAAGATTTGCGGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGGCTGTCACTAATTGCAATATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACACTTGCTATTACTACTCTATTGAAAACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAAATTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATCAGATCTCTGTGCTTGAAATTCCCTTTAAAATATAGATCTCTGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGAATACAAGAAAGCAATTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGATGCCAAGGAAAGTGGTTTGCTTCATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATACTGCATTTCCTGGGAGTTGAAGGACCAAAAACATCCGATCCCAGCAAATATATTCGCTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTAGGGCCAGTGCTGTGAGCACACTGGCAAAGTTTGGTGCTGCTGTTGATGAATTAAAGCCCCGCATTTTTGTACTGCTGAGGCGGTGTCTTTTTGACAGTGATGATGAGGTTCGTGACAGAGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCAGTTGTCGAGACAGATAAAGATGTGAAAGATTTCCTCTTTGGGTCATTTGATATCCCACTTGTCAATCTGGAAACTAGTTTGAAAAACTATGAGCCTTCAGAAGAGGCCTTTGATATTAATTCAGTGCCCAGGGAGGTCAAGTCTCAACCTCTTGCAGAGAAGAAAGCTGCTGGTAAAAAGCCTACTGGATTGGGTGCTCCTCCTAGTGGTCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTTCTATCCATTCCTGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAATACAACTGCACAAACACGATACCAGAACAATTATTGGAAGATGTTATTGTACTTGTGGATGCTTCGGATGCAGAAGAGTTCTCTGAGGTGTTCTCAAAGCCTCTTAGATCTCTGCCTTATGATTCACCTGGGCAGACGTTTGTGGCATTTGAGAGGCCTGAGGGATTGCCAACAGCTGGAAAATTTTCTAACATTCTGAAATTTATTGTTAAAGAGGTTCTTGTTCCCTTTATCCTTGTGAAGCATTGTGGTCTTTCTCTGTCCTAG	2280	0.4206	MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGNVRSPLAQCLLIRYTSQVIRESGNNTQSGDRPFYDFLESCLRHKSEMVIFESARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLAKFGAAVDELKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGSFDIPLVNLETSLKNYEPSEEAFDINSVPREVKSQPLAEKKAAGKKPTGLGAPPSGPPSTADAYERLLLSIPEFANFGKLFKSSEPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVLVDASDAEEFSEVFSKPLRSLPYDSPGQTFVAFERPEGLPTAGKFSNILKFIVKEVLVPFILVKHCGLSLS	759

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g00449	759	Pfam	Adaptin N terminal region	29	540	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Cca04g00449	759	PANTHER	COATOMER SUBUNIT GAMMA	1	744	IPR017106	-
	Cca04g00449	759	PANTHER	COATOMER SUBUNIT GAMMA	1	744	-	-
	Cca04g00449	759	PIRSF	Gamma-COP	7	748	IPR017106	-
	Cca04g00449	759	Gene3D	Coatomer, gamma subunit, appendage domain	617	746	IPR037067	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030126
	Cca04g00449	759	SUPERFAMILY	ARM repeat	29	561	IPR016024	-
	Cca04g00449	759	Gene3D	-	335	553	IPR011989	-
	Cca04g00449	759	Pfam	Coatomer gamma subunit appendage platform subdomain	622	744	IPR013040	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030126
	Cca04g00449	759	Gene3D	-	23	316	IPR011989	-
	Cca04g00449	759	SUPERFAMILY	Clathrin adaptor appendage domain	617	744	IPR013041	-
	Cca04g00449	759	MobiDBLite	consensus disorder prediction	594	620	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g00449	Cca-Chr4	4428584	4436732	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g00449	K17267		-	gmx:100791801	1410.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca04g00449	04	4428584	4436732	Cca04g00449	04	4428584	4436732	ECH