Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00447 ATGGTTTTAGCTTCACGGGTCTCTGAGTATCTTCTTTTCCATGCAGTTTCGCAGCCCTTCATCGGCGTAAACTACGGCCAGGTCGCCGACAACCTTCCGCCGGCTGAGGCCACGGCGGAGCTCCTGAAGTCGACGACCATCGGAAAAGTCCGCCTCTACGGGGCCGACCCGGCGACCATCAAAGCGCTGACAAACTCCGGCATCGGAATCGTGATCGGCGCGGCGAACGGCGAGATAGCGAGTCTAGCCTCCGATCCCGAGTCGGCGACTCAGTGGGTGAACGCGAACGTGTTGCCGTACTACCCGGAAAGCGACATCACTATGATCAGCGTGGGAAACGAAGTGATAAGCTCCGGCGACGAGGCCCTCATTTTGCAGCTTCTCCCGGCGATGCGAAATGTCCAGAAAGCCCTCGACTCCGTATCGCTCCGCGGCAAAATAAAAGTTACGACGGTGCATGCAATGGCCCTTTTGGCCGAATCGGGTCCTCCCTCTTCCGGGTCATTCGACCCGCGTCTCGTGGATACGCTCCAACAGTTGCTGGCTTTTAATAAGGATAACGAATCACCCTTCGCCATCAACCCTTACCCGTTTTTTGCTTACCAGACCGACCCGACACCCGAAACGCTCGCGTTTTGCTTGTTCCAGCCGAATTCGGGTCGGGTCGACTTGGGTAGCGGGAAGCTTTATAAAAACATGTTCGACGCTCAGGTGGATGCTGTGCACGCTGCTTTGAGCCATATGGGGTTCGAGGACATTGAGATTGTGATTGCTGAGACAGGATGGCCCTCTAGTGGGGACAGCAATGAAGTAGGAGCAAGTGTTGAAAATGCCATGGCCTATAATAGGAACCTCATTGCACACCTTAGATCATTGGTTGGCACTCCTTTGATGCCTGGAAAATCTGTAGACACATTCATTTTTGCACTCTATAATGAGGATTTGAAACCTGGTCCTGCTTCTGAGCGAGCATTTGGTTTGTACAAAACTGATCTTACCATGGCATATGATGTTGGCCTACTCAAGTCTAACACTAGTGGACAAATGAATCCACCAGTTACTCCTAAAACACAATGGTGCGTTCCAAAAGTGGGAGTGAGTGAGGCTCAATTGCAGGCAAATATTGATTATATATGTGGTAGCAAAATTGTTGATTGTGGAGCAATTGAAGCAGGAGGTGCTTGTTATGAACCTAACACAATAATATCTCATGCTGCCTTTGTAATGAATCTCTACTTCCAGGAGGCTGGAAGAAATCCATGGAACTGTGATTTCTCTCAAACAGCAATCGTTACATCCCAAAATCCAAGTTACAATACTTGTGTTTATCCTAATGGGAGTACCTGA 1347 0.5004 MVLASRVSEYLLFHAVSQPFIGVNYGQVADNLPPAEATAELLKSTTIGKVRLYGADPATIKALTNSGIGIVIGAANGEIASLASDPESATQWVNANVLPYYPESDITMISVGNEVISSGDEALILQLLPAMRNVQKALDSVSLRGKIKVTTVHAMALLAESGPPSSGSFDPRLVDTLQQLLAFNKDNESPFAINPYPFFAYQTDPTPETLAFCLFQPNSGRVDLGSGKLYKNMFDAQVDAVHAALSHMGFEDIEIVIAETGWPSSGDSNEVGASVENAMAYNRNLIAHLRSLVGTPLMPGKSVDTFIFALYNEDLKPGPASERAFGLYKTDLTMAYDVGLLKSNTSGQMNPPVTPKTQWCVPKVGVSEAQLQANIDYICGSKIVDCGAIEAGGACYEPNTIISHAAFVMNLYFQEAGRNPWNCDFSQTAIVTSQNPSYNTCVYPNGST 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00447 448 Pfam X8 domain 358 429 IPR012946 -
Cca04g00447 448 Gene3D - 354 444 - -
Cca04g00447 448 Gene3D Glycosidases 20 346 - -
Cca04g00447 448 ProSitePatterns Glycosyl hydrolases family 17 signature. 253 266 IPR000490 GO:0004553|GO:0005975
Cca04g00447 448 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 440 IPR044965 GO:0004553|GO:0005975
Cca04g00447 448 SUPERFAMILY (Trans)glycosidases 21 339 IPR017853 -
Cca04g00447 448 Pfam Glycosyl hydrolases family 17 21 338 IPR000490 GO:0004553|GO:0005975
Cca04g00447 448 SMART X8_cls 358 443 IPR012946 -
Cca04g00447 448 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 7 10 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00447 Cca-Chr4 4418743 4422066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00447 17 444 Miscellaneous Gene Families AT2G16230 62.877 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00447 - - gmx:100810568 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00447 04 4418743 4422066 Cca04g00447 04 4418743 4422066 ECH