Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00444 ATGATAAGTGGACTCAACATGAGAAGACAACGCCGGCGTTCCGAAGAAGCGGCAGCGCACCACCGCCGTCCGCCGTTCCTCCTCCACGGCCGGCACCATCTCCTCCGTCTCCGACGTAACCCTAACCGAACTCTCCCAAAACGTCGACCGCCCCTTCCCCATGGCCGACGACCGTCCCTCTCCCGCGGCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCGCGGCGGACGACGCTCTCCATTTCAACGACTccgccaccgccgacgtcgtcctccgcctctacgtcgacggtccctccccgctcgagtcctccgccgattccatctccaactccgacctccacgtctacctccactccgacgtccTACGCCGCTCCAAATACTTCTCTGCGCTCTTATCCGACCGGTGGATCGGCCACGTCCACGTGCCGGAGCACTcctccaccgccgccgccgcccgcgacctcttccgactcaacctcgccgtcgctcccgccgccgccTCGATCCAGTCTCACCTCACCGTCCTGGAGCTTCTCTACACGAACGACTTCGCCGCCGCGGTGGACAGCGCGTCCACGGCGCTGGATCTGTTGCCGGTGGCGCTGGAGCTTCTCTTCGAGGAGTGCGTTCGTTGGTGCGTTGATTTCCTGGAAGCGGTGCCGTGGACGGACGATGAGGAGAAGAGAGTAGTGAGATTGATCCCCTTCCTGAGCGAGGAAGAGTCGAAGGAACTCGTGGCTAGGGTTTCTCCTTCGGGAGAGGACTCGTGCGAGGCGATGCTCCAAGGACTCGTGTCCTCCGCGATGAACAGTTACGGCAACACTGCGTTCGTGAAGGCGTTCGTCGGGAAGATACTGAGGGACTTATCGTCGAAGGAGACGGCGAAGAGAGTGTTGGAGAAAGCCTTCGCGAGAAGCTTGAAGACGGTGAAGGAGTCGTTGGAGGATTACTCGAGTCCCGTGTTCAGAGGGGATCATAATGAGACGGAGGCTATTCAGAGGCTGAATCTGCACAAGGCTTCCACCAATGGGAAGCATCTTCTGTGGCTTGTGGAGAGGATGATCGAGCTTAGGGTTGCCGATGTTGCAGTGAAGGAGTGGAGCGAGCAAGCCGGTTTCACTGCGGATTTGCAGAGGGCGTTTCATGATGATGCCTGGAGGAACATTGTGCCTGGCCTTCCTGCTGTGATTCTAAGGTGCACCTGTAGGCTCGCCAATGCTGTCACTGCTGGCACCATTCTCGCTTCTAGACAGGTGAGAAGGAAGCTGGTAGAAGATTGGCTGCCCGTGTTGGTTGTGTGCAAAGATAATGTTTCACCAATATCACCGAGCAACAAATCGTTGTATCTGGAACTGGAAGAAACATTCTTGCGAATCATCTCCACATTGCCCATGTCAGATGCTCAAGAGTTGCTGCAGCGGTGCCTCAGCTTTTCAACCCGAAATGTTGAAGATTGTCCTCATTTGGTCACTGCATTCAACACCTGGTTCCGCCGTGCTGCCCGACCCCTCAAACCAGATTGTCTCTTTGATCAATGA 1695 0.4419 MISGLNMRRQRRRSEEAAAHHRRPPFLLHGRHHLLRLRRNPNRTLPKRRPPLPHGRRPSLSRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAADDALHFNDSATADVVLRLYVDGPSPLESSADSISNSDLHVYLHSDVLRRSKYFSALLSDRWIGHVHVPEHSSTAAAARDLFRLNLAVAPAAASIQSHLTVLELLYTNDFAAAVDSASTALDLLPVALELLFEECVRWCVDFLEAVPWTDDEEKRVVRLIPFLSEEESKELVARVSPSGEDSCEAMLQGLVSSAMNSYGNTAFVKAFVGKILRDLSSKETAKRVLEKAFARSLKTVKESLEDYSSPVFRGDHNETEAIQRLNLHKASTNGKHLLWLVERMIELRVADVAVKEWSEQAGFTADLQRAFHDDAWRNIVPGLPAVILRCTCRLANAVTAGTILASRQVRRKLVEDWLPVLVVCKDNVSPISPSNKSLYLELEETFLRIISTLPMSDAQELLQRCLSFSTRNVEDCPHLVTAFNTWFRRAARPLKPDCLFDQ 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00444 564 MobiDBLite consensus disorder prediction 8 23 - -
Cca04g00444 564 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 128 556 IPR038920 -
Cca04g00444 564 MobiDBLite consensus disorder prediction 1 26 - -
Cca04g00444 564 MobiDBLite consensus disorder prediction 38 55 - -
Cca04g00444 564 PANTHER EXPRESSED PROTEIN 128 556 - -
Cca04g00444 564 Gene3D Potassium Channel Kv1.1; Chain A 129 301 IPR011333 -
Cca04g00444 564 MobiDBLite consensus disorder prediction 38 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00444 Cca-Chr4 4379250 4384219 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00444 - - gmx:100793732 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00444 04 4379250 4384219 Cca04g00444 04 4379250 4384219 ECH