Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00433 ATGAATCTCATTTACGTGAAAACGGGTTACTCTCGCTTGATCACCTACCTGGTTCCCCTGTGCGTGGTTCCATTTATTGGCATCATCATCATCATGAAGCAAGCATCACACATGAAACAAGAAGACATGGACCAGGTGTGGCTCCACTTGCAATGCAACCTTGTCAGAGTCATCATTTGCTGCACCACCATTGTATTTGGAATCACCTTCTACATCATGAGAAGGTCGAGACCCGTTTACTTGGTGGACTTTGCCTGTTACAAACCCCCACCTCATCTCAAGGTGCCATTCTCCAAATTCATGCTCCACTCCACCCTCAATGGGTACTTCAACGGTTCCTCTCTCGGGTTTCAACGTAAGATTCTTGAACGCTCTGGCCTTGGAGAAGAGACTCATCTCCCACAAGCATTGCACAGCATTCCATCGAACCCTTCCATTGCTGCTGCCAGAGAAGAGGTAGAGCAGCTTGTTCAATCCCACCCCTTCCCTCACTGCTATGATCGTCAACAGGTAGTCAGGTACAAGAAGGGGTATGACGTGAGGACCTACAACTTGGGGGGCATGGGTTGCAGTGCGGGTATTACAGCCATTGATCTTGCAAAGGACTTGCTTCAGCTTCACGGAAACACTTACGCGGTGGTGGTTAGCACAGAGAACATTACTCAGAACTGTTACTTTGGGAACAACAGGGCCATGCTGATACCAAACTGTTTGTTCCGGCTAGGTGGGGCAGCGATTCTTCTTTCAAACAAATTTTCAGAAAGGCGTCGAGCCAAGTACGAGCTTGTTCATGTTGTGAGAACTCACAATGGTGCAGATGACAAGTCGTTCAAGTGTGTTCATCAGGTGCAAGACGCTGTTGGGAAACTCGGCGTGTGTCTTTCAAGGGATCTCATGGAAGTTGCTGGTGAAGCCCTTAAGGCTAACATCACTGCTTTGGGTCCCTTTGTGCTTCCCATGAGGGAGAAGCTCCTCTTCCTTTGTAGTTTCTTGGCCAAGAAGCTATTTGGTTCTGAGAAGAAGGCTTATTATGTGCCAAACTTCAATGTTGTTTTTGACCATTTCTGCATTCATGCTGGAAGCAAAGCAGTGATTGGTGAGGTTGAGAGGAACCTGAAGCTTCTGCCAAGTGACGTGGAAGCTTCTAGAATGGCTCTGCATAGGTCTGGGAACACTTCTTCTAGCTCCATTTGGTATGAGCTGGCTTACATAGAGGCAAAGGGCAAGATGAAGAGGGGAAACCGTGTTTGGCAGATTGCGTTTGGGAGTGGTTTCAAGTGCAACAGTGCTGTGTGGAAGGCCCTCACACATGTGAAACCCTCACCAAACACTCCATGGGAAGATTGCATTCATAGGTACCCAGTTGCTGCATAA 1374 0.4796 MNLIYVKTGYSRLITYLVPLCVVPFIGIIIIMKQASHMKQEDMDQVWLHLQCNLVRVIICCTTIVFGITFYIMRRSRPVYLVDFACYKPPPHLKVPFSKFMLHSTLNGYFNGSSLGFQRKILERSGLGEETHLPQALHSIPSNPSIAAAREEVEQLVQSHPFPHCYDRQQVVRYKKGYDVRTYNLGGMGCSAGITAIDLAKDLLQLHGNTYAVVVSTENITQNCYFGNNRAMLIPNCLFRLGGAAILLSNKFSERRRAKYELVHVVRTHNGADDKSFKCVHQVQDAVGKLGVCLSRDLMEVAGEALKANITALGPFVLPMREKLLFLCSFLAKKLFGSEKKAYYVPNFNVVFDHFCIHAGSKAVIGEVERNLKLLPSDVEASRMALHRSGNTSSSSIWYELAYIEAKGKMKRGNRVWQIAFGSGFKCNSAVWKALTHVKPSPNTPWEDCIHRYPVAA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00433 457 CDD CHS_like 62 432 - -
Cca04g00433 457 PANTHER 3-KETOACYL-COA SYNTHASE 2 157 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca04g00433 457 PIRSF Very_long_ch_3-ktacl-CoA_syn 160 457 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca04g00433 457 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 162 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca04g00433 457 SUPERFAMILY Thiolase-like 71 434 IPR016039 GO:0016746
Cca04g00433 457 PANTHER 3-KETOACYL-COA SYNTHASE 4 2 157 - -
Cca04g00433 457 PANTHER 3-KETOACYL-COA SYNTHASE 4 171 456 - -
Cca04g00433 457 Gene3D - 164 434 IPR016039 GO:0016746
Cca04g00433 457 PANTHER 3-KETOACYL-COA SYNTHASE 171 456 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca04g00433 457 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 353 433 IPR013747 -
Cca04g00433 457 Pfam FAE1/Type III polyketide synthase-like protein 71 158 IPR013601 GO:0006633|GO:0016020|GO:0016747
Cca04g00433 457 Pfam FAE1/Type III polyketide synthase-like protein 171 335 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00433 Cca-Chr4 4310157 4312195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00433 1 456 Miscellaneous Gene Families AT1G19440 59.751 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00433 K15397 - zju:107403372 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00433 04 4310157 4312195 Cca04g00433 04 4310157 4312195 ECH