Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00427 ATGGGGAAGGCGAAGGGGAAGCACCGTTTGGACAAGTACTACCACTTGGCGAAGGAGCACGGTTACAGGTCGAGGGCATCATGGAAGCTGGTCCAGCTCAACTCCAAGTTCCACTTCCTGGAATCCTCACGCGCCGTCCTCGACCTCTGCGCCGCCCCCGGCGGCTGGATGCAGGTGGCGGTGCAGCGCGTTCCCGTCGACCACCTCGTCATCGGCGTCGACCTCGCCCCCATCGCTCCCATCCGCGGCGCCATCGCCATCCAGGAAGACATCACCAGGCCCGAGTGCAAGTCCCGCATCAAGAAGCTCATGAACGAACACGGTTGCCGCGCCTTCGACGTCGTCCTCCACGACGGTTCCCCCAACGTCGGCGGCGCCTGGGCGCAGGAGGCCACGAGCCAGAACGCTCTCGTCATCGATGCTGTTAAGTTGGCCACTCAGTTCTTAGCTCCTAAAGGCATCTTTGTAACCAAGATTTTCAGGTCGCAGGATTACAGTTCTGTTGTGTATTGCTTAAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAACCTGCGGCTAGTCGTTCTGAATCCGCTGAGATATATGTTTTGGGGCTTAGGTACAAGGCTCCTGCCAAGATTGATCCGCGTCTTCTCGATGTCAAGCATCTCTTTCAAGGGTCTGTGGAGCCCCAGTCTAAGGTGGTGGATGTACTTAGAGATAATAAGCAAAAAAGGCATCGTGATGGATATGAGGAGGGAAACACGACTTTAAGGAAGATATCTACTGCTGCAAATTTCATTTGGTCAGATTCTCCTCTGGAGATCCTTGGTTCAGTCACTTCAATAACCTTTACTGATCCAGCTGATTTACCAATCAAGGATCATGAACTAACTACTGAAGAGGTGAAATCTCTCTGTGATGATTTAAGGGTTTTGGGGAAGCAAGACTTCAAGCATCTTCTAAAGTGGAGGATTCACATTAGAAAAGCTCTTTCACCAGCTAAAAAGGCCGATCCTACCACTACAGAACAGGTGGAAAAGGAACAGAAGGTGGATGAAGAAGATAGAATCCTCAATGAAATGGAGGAACTTACCAATGTTATGGACCGCAAGAAGAAACGTGCAAAGAAGCTTCTTGCAAAAAGAAGAGCCAAGGACAAGGCACGAAAAGCAACAGGGATGCAAATGGATGCAGTAGAGGATGGTTATGTAGATCTGGAGTTGTTTTCTCTTTCCTCTATCAAGGGTAAGAAGGATCTGGTAGCTGTTGACAACACTGAGTATGAAGGTGATGAGGTTGAAGACAGTGAAAATGAAGAAATCCATGAAGGTCAAAAGCATTCATCCAGTGACTTGGATGATTCTGATGAGGAACGTAAAAGATATGATGAACAAATGGAAGATTTGTTGGATCAAGCTTATGAGAAGTTTGTTATCAGAAAGGAAGGAAGTACAAAGCAGCGGAAGCGAATTAAAAAATCCTATGATGCAGAGGCCCAACTTTTAGAGGGTGGTGAGGATGATGATATTGTTGAGTCCAAGTATGATTCAGATGAAGATCAGGCTGATCAAGAAGCGAATCCATTAATGGTGCCACTTAATGATGGGGCAGAGCTCACCCAAGAGGAGATCATGAATAAGTGGTTTAGTCAGGATGTGTTTGCTGAAGCTGCCGAGGAAGGAGACTTTGAGAAGGAAGAGAGTAAAGATGAAATGGATATAGATGAGCCTAAGGAGAAGACATCCATTGCAAAAAAGGTCAAGGAAAATAAAACAACAGCTTCAGCAGTGGTAGACCACCCTCAATCTCAAGCTTCCAAAGCAGCAGAGGATTTTGAAATAGTTCCTGCGCCTGCGACTGATTCAAGTGACGATTCATCCTCTGATTCAGAATCAGAGGAGGAAGATATTGAGGCCAAAGCTGAGATATTGGCTTACGCTAAGAAGATGTTGAGGAAAAAGCAACGGGAGCAGATACTGGATGATGCATATAATAAGTACATGTTTGATGACGAGGGATTGCCCAAGTGGTTTCTAGATGAGGAGAAAAAACACCGCCAACCAATAAAACCTATTTCCAAAGAAGAAATTGCAGCTATGAAAGCGCAATTTAAAGAAATTGATGCTCGGCCTGCGAAGAAGGTGGCAGAGGCCAAAGCACGGAAGAAGCGTGTTGCAATGAGGAAGCTGGAGAAGGTGAGGAAGAAGGCGAATGCTATATCTGATCAGGCAGACATATCTGATCGTTCGAAGAGGAAGCAAATTGAACAACTATATAAAAAGGCTGTTCCGAAGAGGCCTAAAAAGGAATATGTAGTTGCAAAGAAAGGTGTCCAAGTAAAGACTGGCAAGGGAAAAGTTCTTGTTGATCGCAGAATGAAGAAGGATGCTAGGAAACGTGGAATGGGTAAGGCAGGAAAAGGAGGTTCCAAGATGAAGGGCAAGGCTCCAAAGGGCAAAGCATCTTCAAAGGCCTCTGCCAAGTCCGGAAGACACAGGAATAAATGA 2490 0.4655 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKFHFLESSRAVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIAPIRGAIAIQEDITRPECKSRIKKLMNEHGCRAFDVVLHDGSPNVGGAWAQEATSQNALVIDAVKLATQFLAPKGIFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLRYKAPAKIDPRLLDVKHLFQGSVEPQSKVVDVLRDNKQKRHRDGYEEGNTTLRKISTAANFIWSDSPLEILGSVTSITFTDPADLPIKDHELTTEEVKSLCDDLRVLGKQDFKHLLKWRIHIRKALSPAKKADPTTTEQVEKEQKVDEEDRILNEMEELTNVMDRKKKRAKKLLAKRRAKDKARKATGMQMDAVEDGYVDLELFSLSSIKGKKDLVAVDNTEYEGDEVEDSENEEIHEGQKHSSSDLDDSDEERKRYDEQMEDLLDQAYEKFVIRKEGSTKQRKRIKKSYDAEAQLLEGGEDDDIVESKYDSDEDQADQEANPLMVPLNDGAELTQEEIMNKWFSQDVFAEAAEEGDFEKEESKDEMDIDEPKEKTSIAKKVKENKTTASAVVDHPQSQASKAAEDFEIVPAPATDSSDDSSSDSESEEEDIEAKAEILAYAKKMLRKKQREQILDDAYNKYMFDDEGLPKWFLDEEKKHRQPIKPISKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANAISDQADISDRSKRKQIEQLYKKAVPKRPKKEYVVAKKGVQVKTGKGKVLVDRRMKKDARKRGMGKAGKGGSKMKGKAPKGKASSKASAKSGRHRNK 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00427 829 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 802 - -
Cca04g00427 829 Coils Coil 338 375 - -
Cca04g00427 829 MobiDBLite consensus disorder prediction 776 829 - -
Cca04g00427 829 MobiDBLite consensus disorder prediction 422 460 - -
Cca04g00427 829 MobiDBLite consensus disorder prediction 495 517 - -
Cca04g00427 829 MobiDBLite consensus disorder prediction 791 812 - -
Cca04g00427 829 Coils Coil 446 466 - -
Cca04g00427 829 MobiDBLite consensus disorder prediction 712 745 - -
Cca04g00427 829 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Cca04g00427 829 MobiDBLite consensus disorder prediction 552 632 - -
Cca04g00427 829 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
Cca04g00427 829 MobiDBLite consensus disorder prediction 477 523 - -
Cca04g00427 829 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 802 - -
Cca04g00427 829 MobiDBLite consensus disorder prediction 565 581 - -
Cca04g00427 829 MobiDBLite consensus disorder prediction 726 745 - -
Cca04g00427 829 MobiDBLite consensus disorder prediction 477 494 - -
Cca04g00427 829 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 801 IPR028589 GO:0008649|GO:0031167
Cca04g00427 829 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Cca04g00427 829 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Cca04g00427 829 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Cca04g00427 829 Pfam Spb1 C-terminal domain 601 794 IPR012920 GO:0005634|GO:0006364|GO:0008168
Cca04g00427 829 MobiDBLite consensus disorder prediction 433 460 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00427 K14857 - gmx:100790741 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00427 04 4245452 4250722 Cca04g00427 04 4245452 4250722 ECH