Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00423 ATGGTGTCTGCTTGTGTGACCTTGAAACCCAATACCCATTTGGTAAACTCAATAAAAGACAATACTTTTCTTGGAGGTGATGGTTTTTTAGGTGAGAGAATCAAAGGGGGTCTGAATTACAGTCCCTGGATCATTAACCAATTGGCCTCAAGTTTGAGAACCCAGGAGAGGGTGAAGAAGGCCAAAGCCAAACCTGGTGTTGTTTCTGCTGTTCTTACATCAAGTGATACTGATACCAAAGAATCAGTGGCCTTTCAAATGCCATCCTTTCTCAGAAGAAAGGCTGATCCAAAAAATGTTGTTTCCATCATATTGGGAGGGGGTCCTGGGATTCAACTCTTTCCTCTTACCAAACGAGCTGCCACACCTGCTGTTCCTGTTGGTGGGTGCTACAGGCTTATAGACATCCCGATGAGCAACTGCATCAACAGTGGCCTTAACAAAATATTTGTACTCACCCAATTCAACTCTGCATCCCTCAACCGTCACATCTCCCGCACCTACTTTGGAAATGGAATCAACTTTGGGGATGGATATGTGGAGGTTCTGGCGGCCACTCAAACACCAGGAGAAGCAGGAAAGAAGTGGTTCCAAGGAACCGCAGATGCTGTGAGGCAATTTACATGGGTATTTGAGGATGCCAAGCACACAGACACTGATAATTTTTTGATCTTGGCTGGAGATCATCTATACCGAATGGACTACATGGACCTTGTGCAGAGTCATGTTGACAGAAATGCAGATATTACCGTATCATGTGCTGCTGTAGGTGACAGCCGTGCATCAGATTTTGGATTGGTCAAGGTAGATGGCAGAGGACGCATCATCCAATTTGCAGAAAAACCAAAGGGAGCTGATATGAAAGCGATGCAAGCAGATACTTCTGTTCTCGGATTGTCACCCCATGATGCAAGAAAGTCGCCATATATTGCATCTATGGGTGTTTATGTATTCAAGAGAGATGTATTACTCAAGCTTCTGAAATGGAGATATCCTACATCCAATGACTTTGGATCTGAAATCATTCCCGCAGCTGTGAGGGAACACAATGTCCAAGCATATTTTTTCAATGACTATTGGGAAGACATTGGAACAATAAAATCATTTTACGATGCCAACTTGGCTCTTACTGAAGAGAACCCGATGTTCAAATTTTATGATCCAAAGACACCTATTTACACATCTCCAAGATTGCTACCACCAACCAAGATTGACAAATGCCGGATTGTGGATGCAATAATCTCCCATGGATGTTTCTTGAGAGAGTGCATTGTCCAACGTTCCATTGTGGGTGAACGTTCACGCTTGGATTATGGTGTTGAGCTTCAGGACACTCTGATGATGGGAGCTGACAATTACCAAACTGAATCGGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTTCCCATTGGAATTGGAAGGAACACCAAAATTAGGAACTGCATAATTGACAAGAATGCAAAGATAGGGAAAGATGTCATCATCATGAACAAAGATGGCGTTCAAGAAGCAGATAGACCAGAAGATGGATTTCACATTCGATCAGGAATCACAATCATATTGGAGAAGGCAACAATAGAAGATGGCACTGTCATATAA 1599 0.4321 MVSACVTLKPNTHLVNSIKDNTFLGGDGFLGERIKGGLNYSPWIINQLASSLRTQERVKKAKAKPGVVSAVLTSSDTDTKESVAFQMPSFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPAVPVGGCYRLIDIPMSNCINSGLNKIFVLTQFNSASLNRHISRTYFGNGINFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFTWVFEDAKHTDTDNFLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDFGLVKVDGRGRIIQFAEKPKGADMKAMQADTSVLGLSPHDARKSPYIASMGVYVFKRDVLLKLLKWRYPTSNDFGSEIIPAAVREHNVQAYFFNDYWEDIGTIKSFYDANLALTEENPMFKFYDPKTPIYTSPRLLPPTKIDKCRIVDAIISHGCFLRECIVQRSIVGERSRLDYGVELQDTLMMGADNYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIMNKDGVQEADRPEDGFHIRSGITIILEKATIEDGTVI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00423 532 CDD LbH_G1P_AT_C 400 526 - -
Cca04g00423 532 Pfam Nucleotidyl transferase 102 378 IPR005835 GO:0009058|GO:0016779
Cca04g00423 532 Gene3D Hexapeptide repeat proteins 398 532 - -
Cca04g00423 532 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 532 IPR011831 GO:0005978|GO:0008878
Cca04g00423 532 SUPERFAMILY Nucleotide-diphospho-sugar transferases 98 493 IPR029044 -
Cca04g00423 532 CDD ADP_Glucose_PP 103 363 - -
Cca04g00423 532 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 86 397 IPR029044 -
Cca04g00423 532 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 196 204 IPR005836 GO:0005978|GO:0008878
Cca04g00423 532 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 100 496 IPR011831 GO:0005978|GO:0008878
Cca04g00423 532 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 1 532 - -
Cca04g00423 532 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 311 321 IPR005836 GO:0005978|GO:0008878
Cca04g00423 532 SUPERFAMILY Trimeric LpxA-like enzymes 394 532 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00423 Cca-Chr4 4222416 4227880 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00423 K00975 - gmx:100808791 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00423 04 4222416 4227880 Cca04g00423 04 4222416 4227880 ECH