Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00412 ATGACTCCCAAACTCCAAACAGTAGTCTCCACCGCAGCCTCGGTGGCAGCCACCGTGATGCTCCTCCGGTCCATCGCGCGCAACTACCTCCCGCCGGAGCTCCACCGCTACCTCCGGTCAAAGGTGTCCGAGTTCCTGTCGTCATTCTCCTCCGAAATCACCCTCGTGATCGACGAGTTCCACGGCCTCACTCCCAACCCTCTCTTCTCCGCCGCCGAGCTCTACCTGAAGCCCCAGGGCTCCCCCGGCACAAAACGGTTCCGCGCCACCATGCCTCCGAAGTCGCGCCACGTGTCCATCCTCGTGGACCACAACCACGAAATGAGCGACTCCTTCTCCGGCGCCACCTTCCGGTGGAGGCTCGTCTCGCAGCGCGTCCCCCCCAAGTACGTCCAGCAAGACGCCTTCAGCGGCTCGTACATGTCCGAAGTGCGATTCTTCGAGCTTCGGTTCCACAAGCGGCACAGGGAGATGGTTCTGGCGGAGTACCTGCCGCGCGTCATggcggcggcggaggaggcgcggcagcggaggaagacgctgcggcTCTTCACTCTGAGGGATCTGAGAATGAGCATGGGGAGGAGAGGGGAGATGTGGGAGTCCGTGAACCTGGATCATCCCGCCACGTTTGAGACGCTGGCCATGGATTCGGAGACCAAGGAGATGATAATTAGGGATTTGGATAGGTTTTTGGAGAGGAAGGATTTGTATAAGAGTGTTGGCAAGGCGTGGAAGAGAGGGTACATGCTTTCTGGCCCTCCTGGTACCGGCAAATCGAGTTTGATTGCTGCTATGGCCAATTATCTCAACTTTGATGTCTATGACTTGGAACTCACTGATCTTAGGAGGAATTCTCAGCTCAGGAATTTGCTCATTGCCACCAACAATCGCTCTATTCTTGTTGTGGAGGATATCGATTGTTCCCTTCAGATGCATGATAGGCTTACAAAATCATCACAATCACAAGCCCTTGTTACTACTCCATTCCCACGGCTTTACAACCTACCTGAAAAACCACCACCCCAGGTGACGTTATCGGGGTTTCTGAATTTCATAGATGGGTTGTGGTCTAGTTGTGGGGATGAGAGGATCATAGTGTTTACGACAAATCACAAGGACAAATTGGACCCTGCTCTGTTGCGACCTGGCCGAATGGATGTGCACATCGACATGACTTACTGCACCCCATGTGGGTTCAAAATGCTGGCGAACAATTACCTTGGGATCACGGAGCACCCACTTTTTGTTGAAGTTGAGAGATTGCTTGGGATGACCAATGTCACTCCTGCGGAGGTGGGGGAGCATTTTTTGCAGAACGAAGACCCGCAAGTTGCACTAGAAAGCCTGATGGATCTCCTTGTAGAGAAGGGACGAAATCATCATGATCAAAGCACCTCTCACCAGTTACCACTCAATGGTTTGAGTCCAGCGGGAAGTTTTGAAAATGAAGGATGA 1458 0.5137 MTPKLQTVVSTAASVAATVMLLRSIARNYLPPELHRYLRSKVSEFLSSFSSEITLVIDEFHGLTPNPLFSAAELYLKPQGSPGTKRFRATMPPKSRHVSILVDHNHEMSDSFSGATFRWRLVSQRVPPKYVQQDAFSGSYMSEVRFFELRFHKRHREMVLAEYLPRVMAAAEEARQRRKTLRLFTLRDLRMSMGRRGEMWESVNLDHPATFETLAMDSETKEMIIRDLDRFLERKDLYKSVGKAWKRGYMLSGPPGTGKSSLIAAMANYLNFDVYDLELTDLRRNSQLRNLLIATNNRSILVVEDIDCSLQMHDRLTKSSQSQALVTTPFPRLYNLPEKPPPQVTLSGFLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDVHIDMTYCTPCGFKMLANNYLGITEHPLFVEVERLLGMTNVTPAEVGEHFLQNEDPQVALESLMDLLVEKGRNHHDQSTSHQLPLNGLSPAGSFENEG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00412 485 Pfam Domain associated at C-terminal with AAA 30 122 IPR025753 -
Cca04g00412 485 PANTHER BCS1 AAA-TYPE ATPASE 3 465 - -
Cca04g00412 485 CDD AAA 222 394 - -
Cca04g00412 485 Gene3D - 200 390 IPR027417 -
Cca04g00412 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 436 IPR027417 -
Cca04g00412 485 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 465 - -
Cca04g00412 485 MobiDBLite consensus disorder prediction 460 485 - -
Cca04g00412 485 Pfam ATPase family associated with various cellular activities (AAA) 250 392 IPR003959 GO:0005524|GO:0016887
Cca04g00412 485 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Cca04g00412 485 SMART AAA_5 245 396 IPR003593 -
Cca04g00412 485 Gene3D - 391 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00412 Cca-Chr4 4160784 4163132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00412 210 419 Miscellaneous Gene Families AT5G58870 27.523 3.05e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00412 K08900 - gmx:100789716 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00412 04 4160784 4163132 Cca04g00412 04 4160784 4163132 ECH