Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00411 ATGGCTGGTGATTCATTTGTGATTATCAATGGCAATGGCAATGGCATCGCTAAGTCAGAGCCTGATCCGCAGAGGACCTACCAAGCAGTGGTGATTGCAACCAGAGATATGGGCATTTCCAAGGATGGAAAATTACCATGGTTTTTACCCACGGATCTCAAGTTTTTCGACGATATCACTACAACAACAACTGATCCTGGGAAGAAGAATGCCGTTGTGATGGGTAGAAAAACATGGGAGAGCATCCCTCCTAAGGAAAGGCCTCTTTCCGGTCGCCTTAATGTTGTTCTGACTCGCTCTGGTAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGTGTGTCTTCTGCCATGGAACTGTTGGCTGCTTCTCCTTACTGCCTGTCGATTGAGAAAGTATTTCTTACAGGAGGTGGAGAGATATTTAGAGAGGCACTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCGAGCATTGAGTGTGACACTTTTATGCCTCGAATTGATACCTCTGTATTTCAGCCATGGTATTCGTCATTCCCTTTGGTGGAAAACAATCTCCGATATGCTTTCACCACTTATGTGCGTGTAAGGAGTTCTTCGGAAGAGTCCCCGGGTCAGAATACGGAACCACTTTTTGATAATGGTTCAGGCTCTCTAGAGTTTGAGGTGAAGAAATTTTCTTTTCTTCCTAAAATGATTTATGAGAGACATGAGGAGTTTAAGTATCTTAGGTTGGTTCAAGAAATCATTTCTGAAGGCACATCTAAGGATGATAGAACAGGGACTGGTACCTTGTCAAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCGCTTCTGACAACAAAGAAAGTATTTTGGCGAGGAGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAGTGCTAAGGTAATGATATCTGTTACCGGTCCTTCCTACTCACAGACATACACGCGATCTTTTCTAGTTAACATTGGTTTGACAGAAAGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACCGACATGCATGCTGACTATTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGACGGATCATTCTCTCAGCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCGCAGTTCTATGTAGCGAATGGGGAGTTATCGTGTCAGATGTATCAGCGATCAGCCGACATGGGTCTGGGTGTGCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCGGGTGATTTTATCCATGTTATCGGGGATGCTCATGTTTACCGCAATCATGTGAGACCTTTGCAGGAGCAGCTCCAGAACCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGATATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTCTAG 1593 0.4344 MAGDSFVIINGNGNGIAKSEPDPQRTYQAVVIATRDMGISKDGKLPWFLPTDLKFFDDITTTTTDPGKKNAVVMGRKTWESIPPKERPLSGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFREALNAPGCEAAHITEIEASIECDTFMPRIDTSVFQPWYSSFPLVENNLRYAFTTYVRVRSSSEESPGQNTEPLFDNGSGSLEFEVKKFSFLPKMIYERHEEFKYLRLVQEIISEGTSKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVMISVTGPSYSQTYTRSFLVNIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00411 530 PRINTS Thymidylate synthase family signature 288 309 IPR000398 GO:0004799|GO:0006231
Cca04g00411 530 PRINTS Thymidylate synthase family signature 463 480 IPR000398 GO:0004799|GO:0006231
Cca04g00411 530 PRINTS Thymidylate synthase family signature 381 400 IPR000398 GO:0004799|GO:0006231
Cca04g00411 530 PRINTS Thymidylate synthase family signature 425 451 IPR000398 GO:0004799|GO:0006231
Cca04g00411 530 PRINTS Thymidylate synthase family signature 407 422 IPR000398 GO:0004799|GO:0006231
Cca04g00411 530 PANTHER THYMIDYLATE SYNTHASE 1 1 530 IPR045097 GO:0016741
Cca04g00411 530 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 239 530 IPR036926 -
Cca04g00411 530 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 233 530 IPR036926 -
Cca04g00411 530 SUPERFAMILY Dihydrofolate reductase-like 27 203 IPR024072 -
Cca04g00411 530 Hamap Thymidylate synthase [thyA]. 247 530 IPR000398 GO:0004799|GO:0006231
Cca04g00411 530 Pfam Thymidylate synthase 249 530 IPR023451 -
Cca04g00411 530 Pfam Dihydrofolate reductase 28 203 IPR001796 GO:0004146|GO:0046654
Cca04g00411 530 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 203 IPR001796 GO:0004146|GO:0046654
Cca04g00411 530 TIGRFAM thym_sym: thymidylate synthase 249 530 IPR000398 GO:0004799|GO:0006231
Cca04g00411 530 PIRSF DHFR-TS 13 530 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cca04g00411 530 CDD DHFR 29 202 IPR001796 GO:0004146|GO:0046654
Cca04g00411 530 ProSitePatterns Thymidylate synthase active site. 392 420 IPR020940 GO:0004799|GO:0006231
Cca04g00411 530 Gene3D Dihydrofolate Reductase, subunit A 12 205 IPR024072 -
Cca04g00411 530 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 530 - -
Cca04g00411 530 CDD TS_Pyrimidine_HMase 250 483 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00411 Cca-Chr4 4151516 4155799 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00411 K13998 - gmx:100786311 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00411 04 4151516 4155799 Cca04g00411 04 4151516 4155799 ECH