Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00406 ATGGTTGTCCTTGCTGCATCCATTGTGAGCAAATCTGGCAAAGTGCTAGTTTCTAGACAATTTGTGGACATGTCTCGTATCAGAATTGAAGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACTGGAAAGCAACACACATATATTGAGACAGAGAATGTGCGCTATGTTTACCAGCCAATGGAAGCACTATACCTGCTTCTTGTAACAAACAAACAAAGCAACATACTTGAAGATTTGACAACTCTGAGACTTCTCTCCAAACTTGTGCCTGAATATTCTTACTCTCTTGAAGAAGAGGATATTTGCCAACATGCATTTGAGTTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAATGTGACTATTGCACAAGTTAAGCAATACTGTGAGATGGAGAGTCATGAAGAGAAACTGCACAAGCTAGTTATGCAGAGCAAAATCAATGAAACTAAGGATGTTATGAAGCGGAAAGCTAGTGAAATTGATAAAAGCAAGATTGAAAAAAACAGAGGTGATAAAGGGGGATTTGGTCCTTTACAGTCAATGGGCTCTGGAAAAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGCGGAACTGGTTTTGGAAGTGGCTCTGGTTTCGGATTGAGTTCTGATGTTGATTCCTTTTCTACCAAGTCTAAAGGTCGTCCAACTTCATCTGCCACTGCTCCACCGAAAGGTCTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAGTTTTTGGAATCACTGAAAGCAGAAGGTGAGGTCATTCTTGAAGATGTTCAGCCAAAACTGGGCGTGTCTCAGGCTGCTGCCCTACCACCTTCAGATCCTATCACTTTAACTGTTGAAGAGAAACTAAATGTAACACTAAAACAAGATGGCGGAATCAGTAATTTTGATGTTCAAGGCACATTGTCTCTTCAAATTCTTGACAAAGAGGATGGACATATTCAAGTTCAGGTACAGACTGGTGAGAATCAAGCCATCCTTTTCAAGACACACCCCAACATGAATAAAGAATTGTTTGCCAATGAAAATATACTAGGCCTAAAGGATCTCAATAGGCCTTTCCCCACTGGTCAAGCTGGTGGTTCTGAAGGTGTAGGTCTTTTAAGGTGGAGAATGCAAAGCAATGATGAGTCAATGGTGCCGCTGACAATCAACTGCTGGCCATCTTCTTCTGGAAACGAAACTTATGTCAGCATTGAGTATGAGGCTTCGTCAATGTTCGATTTGCGGAATGTTGTGATCTCTGTACCTCTTCCAGCTCTTCGAGAAGCACCATCTGTTAGACAGATTGATGGGGAATGGAGGTATGACTCTAGGAATTCCTTTTTGGAGTGGTCTATCCTTCTGATTGATAATTCAAACCGCAGTGGGTCAATGGAATTTGTTGTTCCACAAGCAGAATCATCAGCATTCTTCCCTATTTCAGTTCGTTTTACGGCAACTGATACATTTAGTGACCTGAAGGTCACCAACATCATACCGCTAAAGGGTGGTAATCCTCCCAAACATTCTCAGAGAACACAGTTGATCACAGAAAATTACCAAGTTGTGTGA 1593 0.4124 MVVLAASIVSKSGKVLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYIETENVRYVYQPMEALYLLLVTNKQSNILEDLTTLRLLSKLVPEYSYSLEEEDICQHAFELIFAFDEVISLGHKENVTIAQVKQYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKIEKNRGDKGGFGPLQSMGSGKIENSFSDLSISSSGTGFGSGSGFGLSSDVDSFSTKSKGRPTSSATAPPKGLGMKLGKSQRTNQFLESLKAEGEVILEDVQPKLGVSQAAALPPSDPITLTVEEKLNVTLKQDGGISNFDVQGTLSLQILDKEDGHIQVQVQTGENQAILFKTHPNMNKELFANENILGLKDLNRPFPTGQAGGSEGVGLLRWRMQSNDESMVPLTINCWPSSSGNETYVSIEYEASSMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSFLEWSILLIDNSNRSGSMEFVVPQAESSAFFPISVRFTATDTFSDLKVTNIIPLKGGNPPKHSQRTQLITENYQVV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00406 530 Gene3D Mu homology domain, subdomain B 288 507 - -
Cca04g00406 530 Gene3D Mu homology domain, subdomain B 393 492 - -
Cca04g00406 530 CDD AP_delta-COPI_MHD 286 527 - -
Cca04g00406 530 CDD Delta_COP_N 4 133 - -
Cca04g00406 530 MobiDBLite consensus disorder prediction 221 248 - -
Cca04g00406 530 Gene3D - 3 141 - -
Cca04g00406 530 ProSiteProfiles Mu homology domain (MHD) profile. 285 530 IPR028565 -
Cca04g00406 530 MobiDBLite consensus disorder prediction 158 189 - -
Cca04g00406 530 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 285 529 IPR036168 -
Cca04g00406 530 SUPERFAMILY SNARE-like 5 142 IPR011012 -
Cca04g00406 530 Pfam Clathrin adaptor complex small chain 8 129 IPR022775 -
Cca04g00406 530 PANTHER COATOMER SUBUNIT DELTA 1 529 IPR027059 GO:0006890|GO:0030126
Cca04g00406 530 Pfam Adaptor complexes medium subunit family 285 512 IPR028565 -
Cca04g00406 530 PANTHER S-ACYLTRANSFERASE 1 529 - -
Cca04g00406 530 MobiDBLite consensus disorder prediction 158 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00406 Cca-Chr4 4054004 4062058 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00406 K20471 - gmx:100780122 952.584