Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00403 ATGCTTGTGCTTTTTGAAACTCCTGCGGGATTTGCACTTTTTAAAGTGCTGGATGAGGGGAAACTCTCTAGAGTTGAGGACTTGTGGAAGAACTTTTCCAGCGCGGATACTGCTAGACAGGTGGTCAAATTGAAAGCATTTTCTAAATTTGATAACACTTCAGAAGCTCTAGAGGCAGCTACTTTACTTATTGATGGAAAAGCTAGCAAGGGACTGCGGAAGTTCCTTCGTGCTCATTGTGAAAATGAAACACTTGGTGTTGCTGATTCAAAGCTTGGGAATATGATTAAGGAGAAATTGAAAATCGACTGTATTCACAATAATGCTGTTATGGAGTTAATGAGAGGTGTTAGGAACCAGTTAACTGAACTCATAGCTGGTCTAGCTGTACAAGACATGGCCCCAATGAGCTTGGGTTTATCTCATAGCTTATCCAGATACAAGTTAAAGTTTAGTGCAGAGAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTTGATGATCTTGATAAAGAGTTGAATACCTATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCAGAGCTTACCAAAATAATACAGGATAACATCCTATATGCAAGGGCAGTCAAGTTGATGGGTGATCGGGTTAATGCAGCTGGCCTTGATTTCTCTGAGATTTTGCCAGAGGAAGTTGAGGCAGAGCTGAAGGAGGCATCTGTGATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGGTAAATATTAGACAACTCTGTGATCAGGTTTTGTCTCTTTCGGAATACAGGGCACAACTCTATGATTATCTTAAGAGTAGGATGAACACCATTGCACCTAATTTGACTGCACTGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCTCATGGTGGTAGCTTATTGAATCTTGCGAAGCAGCCTGGTAGTACTGTGCAGATTCTGGGTGCTGAGAAGGCTCTCTTCAGGGCATTGAAGACCAAGCATGCTACCCCTAAGTATGGACTTATATACCATGCATCTTTGATTGGTCAGGCAGCTCCAAAGTTCAAGGGGAAGATTTCTCGGTCACTTGCTGCAAAGTCAGCTTTGGCTATTAGGTGTGATGCACTCGGAGATAGTCAAGATAACTCCATGGGATTGGAGAACAAAGCCAAGCTTGAAGCTCGATTGAGGAACCTTGAAGGCAAAGAATTAGGTCGTTTTGCTGGTTCTGCTAAGGGGAAGCCCAAGATAGAAGCATATGACAAGGACAGAAAGAAAGGAGCTGGAGGACTAATAACCCCTGCTAAGGCATATAACCCTTCAGCTGATTCAGTTATTGGGAAAATGGTTAATTCTGCTATGGATACACAAGAGCCATCTATTGGTGATAAaaagaaacaaaagaaagaaaagaaggataagaagaaaaaggaggagaaaaatgaaGAGGATGCAACTTTGCAGGCTGATGGAGATGTTGGTGAGGAGCCGGAACCTGAAGTCGTGAAAAAGGATAAGAAAAAGAAAAGGAAGGAATCTACTGAGAATGCTGAGTTGCAGAATGGGAATGACGATTTGAATGCAGGAGAAAAAAAGAAAAAGAGGAAAAAGCATGCAGAGCCAGAAGAATCTCCTGAAATGCCAAGCAAAAAGAAAGGGAAAAAAAAGAAAAATGAGGACTAA 1674 0.4116 MLVLFETPAGFALFKVLDEGKLSRVEDLWKNFSSADTARQVVKLKAFSKFDNTSEALEAATLLIDGKASKGLRKFLRAHCENETLGVADSKLGNMIKEKLKIDCIHNNAVMELMRGVRNQLTELIAGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYARAVKLMGDRVNAAGLDFSEILPEEVEAELKEASVISMGTEIGELDLVNIRQLCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKSALAIRCDALGDSQDNSMGLENKAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKAYNPSADSVIGKMVNSAMDTQEPSIGDKKKQKKEKKDKKKKEEKNEEDATLQADGDVGEEPEPEVVKKDKKKKRKESTENAELQNGNDDLNAGEKKKKRKKHAEPEESPEMPSKKKGKKKKNED 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00403 557 Coils Coil 458 485 - -
Cca04g00403 557 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Cca04g00403 557 SUPERFAMILY Nop domain 153 397 IPR036070 -
Cca04g00403 557 MobiDBLite consensus disorder prediction 451 557 - -
Cca04g00403 557 Gene3D Nop domain 285 397 IPR042239 -
Cca04g00403 557 SMART NOSIC_2 159 211 IPR012976 -
Cca04g00403 557 Gene3D - 129 284 - -
Cca04g00403 557 PANTHER PROTEIN NOP56, PUTATIVE-RELATED 1 556 - -
Cca04g00403 557 MobiDBLite consensus disorder prediction 493 515 - -
Cca04g00403 557 MobiDBLite consensus disorder prediction 522 557 - -
Cca04g00403 557 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 556 IPR045056 GO:0030515|GO:0031428|GO:0032040
Cca04g00403 557 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Cca04g00403 557 MobiDBLite consensus disorder prediction 407 435 - -
Cca04g00403 557 MobiDBLite consensus disorder prediction 412 426 - -
Cca04g00403 557 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00403 Cca-Chr4 4034241 4038726 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00403 K14565 - gmx:100775301 927.161