Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00401 ATGAATCGGGAAAGGTTGATGAAGATGGCCGGTTCAGTTAGAACTGGAGGAAAGGGTACCATGAGAAGAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGTGTCAATGCCATCCCTGCAATTGAGGAGGTCAATATCTTTAAGGATGATGTAGTTATCCAGTTTCTAAATCCCAAAGTGCAAGCATCCATTGCCGCCAATACTTGGGTTGTCAGTGGTTCTCCGCAAACAAAGAAGTTGCAGGATATACTCCCTAGCATTATCCATCAATTAGGGCCAGATAACTTGGAAAACCTGAAGAAGTTAGCCGAGCAATTTCAGAAGCAGGCTCCTGAAGGAGGTGCTGGTTCAGCCACTGCAGAAGAGGATAACGACGATGATGTCCCAGACCTTGTTCCTGGACAAGATTTTGAGACAGCTGCTGAGGAGACCAAGGCTTAG 480 0.4625 MNRERLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQKQAPEGGAGSATAEEDNDDDVPDLVPGQDFETAAEETKA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00401 159 SMART NAC_2 36 91 IPR002715 -
Cca04g00401 159 PANTHER TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER 1 159 IPR039370 -
Cca04g00401 159 Pfam NAC domain 36 91 IPR002715 -
Cca04g00401 159 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BETA 1 159 - -
Cca04g00401 159 MobiDBLite consensus disorder prediction 119 159 - -
Cca04g00401 159 ProSiteProfiles NAC A/B domain profile. 33 97 IPR002715 -
Cca04g00401 159 Gene3D - 48 104 IPR038187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00401 Cca-Chr4 4019510 4022585 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00401 K01527 - gmx:100500153 295.049