Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00397 ATGAATCAGATTCTTATCCTATTCGCAGTTTTCTGCGTCGCATTCgcggcggcggcggcggaggcgacctcttccggcggcggcgaggaggcgTTGATCCGGCAGGTGGTGGACGGCGTGGGGGCGGAGCAGCACTTTTCGGAGTTCAAGCTGAGGTTCGGGAAGGCGTACGAGTCCCAGGAGGAGCACGATTACAGGTTGAGGGTGTTCGAGGCTAACTTGCGCCGCGCCCGGCGCCACCAGAGCCTGGACCCTTCGGCGGTTCACGGCGTGACGCGGTTCTCCGATCTGACGCCGTCGGAGTTCAAAAAGAAGGTTTTGGGACTGAGAGGTGTGAGGTTGCCTACCGATGCGAATAAAGCACCGATTCTACCCACTGACGATCTTCCCAGTGATTTTGATTGGAGAGATCATGGAGCAGTTACTCCTGTTAAGAATCAGGGTTCGTGCGGTTCTTGTTGGAGCTTCAGCACCACTGGGGCTCTGGAAGGTGCGCACTTTCTGGCTACTGGGGAACTTGTCAGTCTTAGCGAGCAGCAGCTTGTTGATTGTGATCACGAGTGTGATCCAGATGAACCAGGTTCTTGCGACTCCGGGTGCAATGGTGGATTGATGAATAGTGCTTTTGAGTACATCCTAAAATCTGGTGGAGTCATGCGCGAGGAAGACTATCCTTATTCTGGCACTGATCGCGGGACCTGCAAATTCGATAAAGGAAAGATTGCAGCCTCAGTGGCAAACTTCAGTGTCATCTCACTAGATGAAGACCAGATTGCTGCGAATCTGGTGAAAAATGGCCCTCTTGCTGTGGCGATCAATGCAGTATTTATGCAGACATATATCGGTGGAGTATCATGCCCGTACATATGTTCAAGAAGGCTGGATCATGGGGTGTTGCTGGTAGGATATGGTTCAGGTGGCTATTCACCCATTCGGATGAAGGAGAAGCCATTTTGGATAATCAAGAACTCGTGGGGAGAGAAGTGGGGAGAAAATGGATTCTACAAGATATGCCGGGGACGAAATGTCTGTGGGGTGGACTCCATGGTTTCAACTGTGGCTGCTGTTCATACAACTACTCAGTAG 1086 0.488 MNQILILFAVFCVAFAAAAAEATSSGGGEEALIRQVVDGVGAEQHFSEFKLRFGKAYESQEEHDYRLRVFEANLRRARRHQSLDPSAVHGVTRFSDLTPSEFKKKVLGLRGVRLPTDANKAPILPTDDLPSDFDWRDHGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHECDPDEPGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGTCKFDKGKIAASVANFSVISLDEDQIAANLVKNGPLAVAINAVFMQTYIGGVSCPYICSRRLDHGVLLVGYGSGGYSPIRMKEKPFWIIKNSWGEKWGENGFYKICRGRNVCGVDSMVSTVAAVHTTTQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00397 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 318 337 IPR025661 -
Cca04g00397 361 SMART Inhibitor_I29_2 46 102 IPR013201 -
Cca04g00397 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 355 - -
Cca04g00397 361 SUPERFAMILY Cysteine proteinases 44 353 IPR038765 -
Cca04g00397 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 147 158 IPR000169 -
Cca04g00397 361 PANTHER CYSTEINE PROTEASE RD19C-RELATED 34 355 - -
Cca04g00397 361 Pfam Cathepsin propeptide inhibitor domain (I29) 46 102 IPR013201 -
Cca04g00397 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 294 304 IPR025660 -
Cca04g00397 361 SMART pept_c1 129 354 IPR000668 GO:0006508|GO:0008234
Cca04g00397 361 CDD Peptidase_C1A 130 353 IPR039417 -
Cca04g00397 361 PRINTS Papain cysteine protease (C1) family signature 147 162 IPR000668 GO:0006508|GO:0008234
Cca04g00397 361 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Cca04g00397 361 PRINTS Papain cysteine protease (C1) family signature 318 324 IPR000668 GO:0006508|GO:0008234
Cca04g00397 361 Pfam Papain family cysteine protease 129 352 IPR000668 GO:0006508|GO:0008234
Cca04g00397 361 Gene3D Cysteine proteinases 28 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00397 Cca-Chr4 3999092 4001373 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00397 K01373 - gmx:100812198 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00397 04 3999092 4001373 Cca04g00397 04 3999092 4001373 ECH