Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00391 ATGGCACTGATGCAAATAACAATTAAGCATTGGAACGAAAGTTTTGATGAGCACGCAATCTCATCTGAAAAGAGAAGTGAATATTCTCGTTCTCTCTCTTCTCTCCATACATGCTCATCAGCACACACTTCTGTCGGTGAACTCCATTTCATAATTCCATTCAGATCTGAGGGGCAGTGTTTTGGCGTGATCCAGCTATGGGATTACCGAATGGGAACCCTAATTGACAGATTCGATGAGCACGATGGACCTGTCAGAGGTGTTCATTTCCATAATTCGCAGCCTCTCTTTGTCTCTGGAGGGGATGATTACAAGATTAAGGTTTGGAACTATAAGATGCATAGGTGTTTGTTCACTCTTCTAGGACACCTTGATTATATCCGTACTGTGCAATTTCATCATGAGAACCCGTGGATTGTGAGTGCCAGTGATGATCAGACCATTCGCATTTGGAACTGGCAGTCACGTACCTGTATATCTGTTTTAACTGGGCACAATCATTATGTCATGTGTGCTTCGTTCCACCCAAAAGAGGATATTGTTGTGTCAGCCTCCCTGGACCAGACTGTTCGTGTTTGGGATATTGGTTCTCTCAAAAGGAAGGCTGGGCCTCCTGCAGATGACATTCTACGATTGAGTCAGATGAACACAGATCTTTTTGGAGGTGTTGATGCAGTTGTTAAGTATGTATTAGAAGGTCATGACCGGGGTGTCAACTGGGCTGCTTTTCATCCTACACTGCCTCTCATTGTCTCAGGAGCTGATGACCGACAAGTGAAACTTTGGAGGATGAATGACACTAAGGCATGGGAAGTGGATACTTTGAGAGGGCACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTTTCAAATTCTGAGGATAAAAGTATTCGAGTATGGGATGCCACAAAGCGGACTGGAATTCAAACTTTCCGCAGAGAGCATGATCGGTTTTGGATTCTTTCTACACATCCTGAAATGAATTTGTTGGCAGCTGGTCATGACAGTGGCATGATAGTCTTTAAGCTAGAGAGAGAAAGGCCCGCTTTTGCAGTTAGTGGTGATTCTTTATTCTACACAAAAGACCGATTCTTGCGTTTCTATGAATTTTCAACTCAGAGAGAGACACAAGTACTTACAATTCGACGACCTGGTTCTTCAAGTCTGAATCAAAGTCCCAAGACTCTTTCCTACAGCCCTTCCGAAAATGCAATTCTTCTCTGTTCAGATGTGGATGGGGGATCTTATGAGTTGTATTGCATATCGAAAGATGGGACAAAGGACAGTTTTGGTAGGGGTGATATGCAAGATCCAAAGAAAGGTCTTGGAGGGTCTGCAGTCTTTGTGGCTCGGAATAGGTTTGCGGTGCTTGACAAAGGCAGTAACCAAGTCTCTGTTAAAAATCTGAAGAATGATATTGTCAAAAAGAGTGCCCTTCCGATTGCGGCTGATGCTATATTCTATGCTGGAACAGGCAACTTGCTATGTAGGTCAGAGGATAGGGTTTTTATATTTGATCTACAGCAGAGGATTGTTCTCGGTGATCTTCAGACCCCTTTTATAAAGTATGTTGTCTGGTCTAATGACATGGAAAGTGTTGCTCTGCTCAGTAAACATGCGATTGTCATTGCTAGCAAGAAGCTTGTGCACCAATGCACCCTTCATGAGACTATCCGAGTAAAAAGTGGAGCCTGGGATGACAACGGTATTTTTATTTACACAACATTAAATCATATCAAATACTGCCTCCCCAATGGAGATAGTGGGATAATAAAAACACTTGATGTCCCAATTTATATCACAAAGGTTGTTGGAAACACCATCTTTTGCTTGGGTCGGGATGGGAAAAACAAGGCTATAACTATTGATGCAACAGAATATATCTTTAAGCTTTCCTTGTTGAAGAAACGATATGACCATGTTATGAACATGATAAGGAATTCACAGCTTTGTGGACAGGCTATGATTGCTTATCTACAACAGAAAGGGTTTCCAGAAGTTGCCCTCCATTTTGTGAAAGATGAGAGAATTCGATTCAATTTGGCTTTGGAGAGTGGCAACATTCAAATTGCAGTTGCATCAGCAACGGCAATTGATGAAAAAGATCACTGGTATCGGTTAGGGGTTGAAGCTCTTCGTCAAGGCAACTCTGGTATAGTAGAGTATGCATACCAGAGGACTAAAAATTTTGAGAGACTGTCATTCCTTTATCTCATTACTGGTAATGTGGAAAAACTTTCAAAAATGTTGAAAATTGCTGAAGTGAAGAATGATGTGATGGGCCAGTTTCACAATGCCCTATATATGGGTGACATCAGAGAGCGTGTTAAGATCTTGGAGAATGCGGGACATTTGCCTCTTGCTTATGTCACTGCATCAATCCATGGGCTACATGATGTTGCTGAAAGGCTTGCAGCTGAACTGGGGGATAATGTTCCATCTTTGCCCGAAGGAAAACAACAATCTCTCTTGATGCCGCCATCACCTGTTTTGTGTGGTGGTGATTGGCCCCTTCTTAGGGTCATGCGGGGAATATTTGATGGTGGTTTTAATAATACAGATCGAGATGCAGATGATGAAGAGTATGAGGCTGCTGATGGTGATTGGGGTGAGGAGCTTGACATGGTTGATGTAGATGGCTTACAAAATGGAGATGTTGCTGCAATCTTGGATGGTGTGGATGTGGCTGAAGAGGATGACGAAGAAGGTGGATGGGAGCTGGAAGATTTAGAGCTTCCCCCTGAAGCTGACACACCAAAAGTTTCCGTCAGTTCACGATCTTCAGTTTTTGTGGCCCCAACACCTGGGATGGCAGTTAGCCAGATATGGGTTCAGAGATCATCACTTGCAGCTGATCATGTAGCTGCTGGCAATTTTGATACTGCAATGAGATTATTGAACAGGCAACTTGGGATAAAGAACTTTGACCCCTTGAAATCTTTGTTCCTAGATCTCCATACTGGCAGTCATTCCTATCTGCGTGCCTTTTCATCTGCTCCGGTTGTATCAATTGCTGTTGAAAGAGGCTGGACTGAGTCATCTAGTCCAAATGTAAGAGGTCCACCTGCACTTCCTTTCAGATTGTCTCAATTAGATGAAAAACTCAAAGCTGGTTATAAGTCAACAACAGCTGGGAAATTTACTGATGCTCTTCGCACTTTTGTCAATATTCTTCACACAATTCCTTTGATTGTTGTTGAGTCAAGGAGGGAGGTTGATGATGTGAAAGAACTCATTATCATAGTGAAAGAATATGTTTTGGGTCTGCAGATGGAGCTGAAACGAAGGGAAATTAAAGACAATCCAGCACGCCAGCTAGAGCTTGCAGCTTACTTCACCCACTGCAATCTTCAGCCACCTCACTTGAGGCTAGCTTTGCTGAATGCCATGACTGTCTGCTACAAGGCAAAGAACCTTGCTACGGCTGCTAACTTTGCCAGGAGGCTACTTGAGACCAATCCTACCGTTGAAAACCAAGCCAAGACAGCAAGGCAAGTGCTGGCAGCTGCTGAAAGGAATATGACTGATGCCATACAGTTGAACTACGATTTTCGGAATCCATTTGTAATTTGTGGAGCAACCTATGAGCCTATTTATCGTGGACAGAAGGATGTCTCTTGCCCATATTGTACTTCCCGTTTTGTGCCAAACCAAGAAGGGCAGCTATGTGCTGTGTGTGATCTTTCAGTGGTAGGGGCTGATGCTTCTGGATTGCTCTGCTCTCCTTCCCAGATTCGTTGA 3759 0.432 MALMQITIKHWNESFDEHAISSEKRSEYSRSLSSLHTCSSAHTSVGELHFIIPFRSEGQCFGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILSTHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRETQVLTIRRPGSSSLNQSPKTLSYSPSENAILLCSDVDGGSYELYCISKDGTKDSFGRGDMQDPKKGLGGSAVFVARNRFAVLDKGSNQVSVKNLKNDIVKKSALPIAADAIFYAGTGNLLCRSEDRVFIFDLQQRIVLGDLQTPFIKYVVWSNDMESVALLSKHAIVIASKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNTIFCLGRDGKNKAITIDATEYIFKLSLLKKRYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENAGHLPLAYVTASIHGLHDVAERLAAELGDNVPSLPEGKQQSLLMPPSPVLCGGDWPLLRVMRGIFDGGFNNTDRDADDEEYEAADGDWGEELDMVDVDGLQNGDVAAILDGVDVAEEDDEEGGWELEDLELPPEADTPKVSVSSRSSVFVAPTPGMAVSQIWVQRSSLAADHVAAGNFDTAMRLLNRQLGIKNFDPLKSLFLDLHTGSHSYLRAFSSAPVVSIAVERGWTESSSPNVRGPPALPFRLSQLDEKLKAGYKSTTAGKFTDALRTFVNILHTIPLIVVESRREVDDVKELIIIVKEYVLGLQMELKRREIKDNPARQLELAAYFTHCNLQPPHLRLALLNAMTVCYKAKNLATAANFARRLLETNPTVENQAKTARQVLAAAERNMTDAIQLNYDFRNPFVICGATYEPIYRGQKDVSCPYCTSRFVPNQEGQLCAVCDLSVVGADASGLLCSPSQIR 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 152 - -
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 307 - -
Cca04g00391 1252 PANTHER COATOMER 62 1214 - -
Cca04g00391 1252 Pfam Coatomer WD associated region 373 802 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Cca04g00391 1252 PANTHER COATOMER SUBUNIT ALPHA 62 1214 - -
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Cca04g00391 1252 Pfam WD domain, G-beta repeat 115 152 IPR001680 GO:0005515
Cca04g00391 1252 Pfam WD domain, G-beta repeat 157 194 IPR001680 GO:0005515
Cca04g00391 1252 Pfam WD domain, G-beta repeat 229 262 IPR001680 GO:0005515
Cca04g00391 1252 Pfam WD domain, G-beta repeat 76 110 IPR001680 GO:0005515
Cca04g00391 1252 Pfam WD domain, G-beta repeat 272 307 IPR001680 GO:0005515
Cca04g00391 1252 SMART WD40_4 71 110 IPR001680 GO:0005515
Cca04g00391 1252 SMART WD40_4 224 263 IPR001680 GO:0005515
Cca04g00391 1252 SMART WD40_4 310 348 IPR001680 GO:0005515
Cca04g00391 1252 SMART WD40_4 155 194 IPR001680 GO:0005515
Cca04g00391 1252 SMART WD40_4 113 152 IPR001680 GO:0005515
Cca04g00391 1252 SMART WD40_4 268 307 IPR001680 GO:0005515
Cca04g00391 1252 Gene3D - 55 350 IPR015943 GO:0005515
Cca04g00391 1252 PRINTS G protein beta WD-40 repeat signature 139 153 IPR020472 -
Cca04g00391 1252 PRINTS G protein beta WD-40 repeat signature 294 308 IPR020472 -
Cca04g00391 1252 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Cca04g00391 1252 CDD WD40 62 348 - -
Cca04g00391 1252 Gene3D - 674 846 - -
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 316 IPR001680 GO:0005515
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 195 IPR001680 GO:0005515
Cca04g00391 1252 SUPERFAMILY DPP6 N-terminal domain-like 354 583 - -
Cca04g00391 1252 Pfam Coatomer (COPI) alpha subunit C-terminus 849 1252 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 119 IPR001680 GO:0005515
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 162 195 - -
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 161 IPR001680 GO:0005515
Cca04g00391 1252 SUPERFAMILY WD40 repeat-like 62 346 IPR036322 GO:0005515
Cca04g00391 1252 PIRSF Alpha-COP 49 1248 IPR016391 GO:0006886|GO:0006888|GO:0030126
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 78 110 - -
Cca04g00391 1252 ProSitePatterns Trp-Asp (WD) repeats signature. 181 195 IPR019775 -
Cca04g00391 1252 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00391 Cca-Chr4 3947300 3952597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00391 93 350 Miscellaneous Gene Families AT5G08390 25.194 2.46e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00391 K05236 - gmx:100802600 2271.12