Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00388 ATGGCCACATCGTCACGTGCAAGGAGCCGCTCGCCGTTTTCGCACCGCAAATCCTCAACTCCTCACTCCTCTGCTTCCTCTTCCACTTCTTCACTAACCAACGGACGCTTAATGCCTCGCTCGTGTTCTTCTTCTACGTCTTCGTTTCACAACTCCGGCGGTGGCCGATCCATGACTCCGAGTCGCGGTTGCAGCGACTCGGTCTACTACGGTTACGGTAATCCTTCACCGCTGGAGTTCGGAATGGAGGAGGTGATCACGGAGCCTGTGGATTCTTCCAGGTCTCGGGACAGCATTTCGGTAACGATTCGGTTCAGACCGTTGAGTGAAAGAGAGTACCAGAGAGGAGACGAGATCGCGTGGTATGCGGATGGTGATAAGATTGTGCGGAATGAGTATAATCCAGCTACTGCTTATGCATTTGATAGAGTGTTTGGACCGCATACAATTTCCGACGAGGTCTATGAAGTAGCTGCCAAACCTGTAGTGAAGTCTGCCATGGAAGGTGTAAATGGAACTGTTTTTGCATACGGTGTGACGAGTAGTGGTAAGACACATACTATGCATGGAGACCAAAATTCTCCTGGTATCATACCGTTGGCTATAAAAGATGTTTTCAGCATTATCCAAGATACTCCAGGAAGAGAGTTCTTACTCCGAGTGTCATATCTAGAAATATACAATGAGGTGATAAATGACTTGCTTGACCCAACTGGCCAAAATTTACGTGTTAGAGAAGATGCACAGGGTACTTATGTGGAGGGTATAAAGGAAGAAGTTGTTTTGTCTCCTGGACATGCCCTTTCCTTCATTGCTGCTGGGGAAGAGCATCGTCATGTTGGATCAAACAATTTTAACCTCTTTAGCAGCCGAAGTCACACGATTTTTACACTTATGATTGAAAGCAGTGCCCATGGTGAAGATTATGATGGAGTCGTCTTCTCTCAGCTTAACTTAATCGATCTTGCTGGATCTGAGAGCTCGAAAACTGAAACAACTGGACTTAGAAGAAAAGAAGGATCTTACATAAACAAAAGTCTTCTGACACTTGGAACAGTCATTGGAAAATTGAGCGAGGGGAAAGCATCTCATGTTCCATATCGAGATTCAAAGCTTACTCGCCTCCTGCAGTCTTCACTTAGTGGGCATGGCCACGTTTCACTTATCTGCACTGTAACTCCAGCATCCAGTAATATGGAAGAAACTCATAATACCTTGAAGTTTGCTAGCAGGGCCAAGCGAGTAGAAATATATGCCTCACGTAATAAGATTATTGACGAAAAATCTCTAATTAAGAAATACCAGAGGGAAATTTCAGTCCTAAAACATGAACTTGATCAACTGAAGAAGGGGATGCAACTTGGTGTCAACCACGAGGAGATTATGAGCTTAAAGCAAAAGTTGGAAGAAGGTCAAGTGAAAATGCAGTCAAGATTGGAAGAAGAGGAGGAAGCGAAGGTTGCTCTGATGAGTCGGATCCAGAAGCTAACCAAGCTCATTCTGGTTTCGTCAAAGAATGCAATTCCGGGATATCTAACTGATTCTTCCAGCCATCATCAGAGTCACACTGTTGGCGAGGATGATGGAGGGATGACAATGTCTGATGAGATGGATCTTCTAGTTGAGCAAGTAAAAATGCTTGCTGGGGATATTGCTTTCAGTACCAGCTCTCTGAAACGTTTAATGGAGCAGTCTGTAAATGATCCTGAAAGCTCCAAAATACAGATTGAGAACTTGGAACAAGATATCGAAGAAAAAAGGAAGCAAATGATGGTTTTAGAACAAAGAATAGTTGAGAGTGGTGAATCTTCCGTAGCTAACTCATCACTGGTTGAAATGCAGCAGACAATCACAAGATTAATGACTCAGTGTGATGAAAAGGCGTTTGAGCTGGAGATTAAATCTGCAGACAACCGTGTTCTTCAAGAACAGTTAGATAATAAGTGTTCTGAAAACAGAGAATTGCAAGAAAAGGTGAAGCTGCTAGAGCAGCACCTGGCAACAGTTACCGGTGGTACCTCGTCAGTGCTTACTGATCAGTGTCCTTCTGGAGAACACATTGATGAGTTGAAAAGGAAAATACAATCCCAGGAGATTGAAAATGAAAAACTGAAGCTGGAGCAAGTTCACTTGTCAGAAGAGAATAGTGGGTTGCATGTGCAGAATCAGAAACTCTCTGAAGAAGCGTCTTATGCCAAAGAACTGGCCTCTGCAGCTGCTGTTGAATTGAAGAATTTGGCTGGGGAAGTGACCAAACTTTCGTTGCAGAATGCAAAGTTAGAAAAGGAATTGATGGCTGCTCGAGACCTGGCTAACAGTCGAAATGGTGTTGTACAAACAGTTAACGGTGTTAACCGCAAATACAATGATGCAAGATCTGGGAGAAAGGGAAGAATTTCTAGCCGTGCTAATGAAAGTTTGGGAGTTGGTTTGGATGAATTTGAGTCTTGGAGTCTTGATGCTAGTGATCTGAAGATGGAGCTACAGGCTAGGAAACAACGAGAGGCAGCTCTTGAGGCTGCATTAGCTGAAAAGGAATTTCTGGAAGAAGAATACAGGAAAAAGGTTGAAGAGGCCAAAAATAGAGAAGCCTCCTTGGAGAACGATTTAGCCAATATGTGGGTCCTTGTCGCTAAGTTAAAGAAAGAAGGGGGTGCCGTCCCTGAATCAAACATTGATATAAAAGAAGTTGATGTAGAAGCACATACAAATGATCCGAAAAGTAATGACATTGAAGGTAGTATAGTCCCCAAGGAGCCTGTTATGGATGTATCAATTCCAGAAAATGAAGTAACCAATGAAGAACCTTTGGTTGTTCGTCTTAAGGCACGCATGCAAGAGATGAAGGAAAAAGAATTCAAGCATCTTGGCAATGGAGATGCCAATTCTCATGTTTGTAAAGTATGTTTTGAATCTTCAACAGCTGCAATTCTTCTTCCATGCCGGCATTTTTGTTTGTGTAAATCTTGTTCACTTGCTTGTTCTGAATGTCCAATATGCCGCACCAATATTTCAGATAGGCTTCTTGCTTTTACTTCTTGA 3042 0.4306 MATSSRARSRSPFSHRKSSTPHSSASSSTSSLTNGRLMPRSCSSSTSSFHNSGGGRSMTPSRGCSDSVYYGYGNPSPLEFGMEEVITEPVDSSRSRDSISVTIRFRPLSEREYQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHTISDEVYEVAAKPVVKSAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGEDYDGVVFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISVLKHELDQLKKGMQLGVNHEEIMSLKQKLEEGQVKMQSRLEEEEEAKVALMSRIQKLTKLILVSSKNAIPGYLTDSSSHHQSHTVGEDDGGMTMSDEMDLLVEQVKMLAGDIAFSTSSLKRLMEQSVNDPESSKIQIENLEQDIEEKRKQMMVLEQRIVESGESSVANSSLVEMQQTITRLMTQCDEKAFELEIKSADNRVLQEQLDNKCSENRELQEKVKLLEQHLATVTGGTSSVLTDQCPSGEHIDELKRKIQSQEIENEKLKLEQVHLSEENSGLHVQNQKLSEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELMAARDLANSRNGVVQTVNGVNRKYNDARSGRKGRISSRANESLGVGLDEFESWSLDASDLKMELQARKQREAALEAALAEKEFLEEEYRKKVEEAKNREASLENDLANMWVLVAKLKKEGGAVPESNIDIKEVDVEAHTNDPKSNDIEGSIVPKEPVMDVSIPENEVTNEEPLVVRLKARMQEMKEKEFKHLGNGDANSHVCKVCFESSTAAILLPCRHFCLCKSCSLACSECPICRTNISDRLLAFTS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00388 1013 Coils Coil 431 451 - -
Cca04g00388 1013 PANTHER CENTROMERE PROTEIN E 529 974 - -
Cca04g00388 1013 PANTHER CENTROMERE PROTEIN E 57 528 - -
Cca04g00388 1013 Coils Coil 576 596 - -
Cca04g00388 1013 Coils Coil 831 869 - -
Cca04g00388 1013 CDD KISc_CENP_E 101 415 - -
Cca04g00388 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 940 1011 IPR013083 -
Cca04g00388 1013 Coils Coil 687 714 - -
Cca04g00388 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 452 IPR027417 -
Cca04g00388 1013 MobiDBLite consensus disorder prediction 1 60 - -
Cca04g00388 1013 ProSiteProfiles Kinesin motor domain profile. 98 415 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00388 1013 Coils Coil 743 770 - -
Cca04g00388 1013 Gene3D Kinesin motor domain 89 446 IPR036961 -
Cca04g00388 1013 MobiDBLite consensus disorder prediction 16 60 - -
Cca04g00388 1013 Coils Coil 465 499 - -
Cca04g00388 1013 Pfam Zinc finger, C3HC4 type (RING finger) 964 1006 - -
Cca04g00388 1013 SUPERFAMILY RING/U-box 965 1005 - -
Cca04g00388 1013 ProSitePatterns Kinesin motor domain signature. 315 326 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca04g00388 1013 Coils Coil 638 665 - -
Cca04g00388 1013 SMART kinesin_4 96 423 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00388 1013 Pfam Kinesin motor domain 104 415 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00388 1013 ProSiteProfiles Zinc finger RING-type profile. 966 1001 IPR001841 -
Cca04g00388 1013 PRINTS Kinesin heavy chain signature 169 190 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00388 1013 PRINTS Kinesin heavy chain signature 283 300 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00388 1013 PRINTS Kinesin heavy chain signature 316 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00388 1013 PRINTS Kinesin heavy chain signature 365 386 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00388 1013 PANTHER KINESIN-LIKE PROTEIN KIN-7D, MITOCHONDRIAL 57 528 - -
Cca04g00388 1013 PANTHER KINESIN-LIKE PROTEIN KIN-7D, MITOCHONDRIAL 529 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00388 Cca-Chr4 3920583 3933971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00388 36 1013 Miscellaneous Gene Families AT4G39050 71.456 0.0 1447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00388 K11498 - gmx:100780424 1778.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00388 04 3920583 3933971 Cca04g00388 04 3920583 3933971 ECH